[IT-3817] update python version

* Python 3.8 has been deprecated, updating to python 3.11
* Update dependencies
* Update pre-commit linters

.github/actions/sam-build/action.yaml

@@ -8,7 +8,7 @@ runs:
     # Convert Pipfile.lock to requirements.txt for sam
     - uses: actions/setup-python@v4
       with:
-        python-version: 3.8
+        python-version: 3.10
     - run: pip install -U pipenv
       shell: bash
     - run: pipenv requirements > requirements.txt

.github/workflows/test.yaml

@@ -13,7 +13,7 @@ jobs:
       - name: Set up Python
         uses: actions/setup-python@v4
         with:
-          python-version: 3.8
+          python-version: 3.10
       - uses: pre-commit/[email protected]
 
 # This project doesn't have any tests
@@ -24,7 +24,7 @@ jobs:
 #      - name: Set up Python
 #        uses: actions/setup-python@v4
 #        with:
-#          python-version: 3.8
+#          python-version: 3.10
 #      - run: pip install -U pipenv
 #      - run: pipenv install --dev
 #      - run: pipenv run python3 -m pytest tests/ -vv

.gitignore

@@ -133,3 +133,6 @@ dmypy.json
 
 # generated dynamically from Pipfile
 requirements.txt
+
+# mac files
+.DS_Store

.pre-commit-config.yaml

@@ -1,20 +1,20 @@
 repos:
 -   repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.0.1
+    rev: v5.0.0
     hooks:
     -   id: end-of-file-fixer
     -   id: trailing-whitespace
     -   id: check-ast
 -   repo: https://github.com/adrienverge/yamllint
-    rev: v1.26.3
+    rev: v1.35.1
     hooks:
     -   id: yamllint
 -   repo: https://github.com/awslabs/cfn-python-lint
-    rev: v0.54.4
+    rev: v1.18.1
     hooks:
     -   id: cfn-python-lint
         files: template\.(json|yml|yaml)$
 -   repo: https://github.com/Lucas-C/pre-commit-hooks
-    rev: v1.1.10
+    rev: v1.5.5
     hooks:
     -   id: remove-tabs

Pipfile

@@ -8,7 +8,7 @@ boto3 = "~=1.17"
 
 [packages]
 synapseclient = ">=2.1,<3"
-pyyaml = ">=5.4,<6"
+pyyaml = "~=6.0"
 
 [requires]
-python_version = "3.8"
+python_version = "3.10"

docker/Dockerfile

@@ -2,7 +2,7 @@ FROM ubuntu:20.04
 
 RUN apt-get update \
  && DEBIAN_FRONTEND=noninteractive apt-get install -y \
-    python3.8 \
+    python3.10 \
     python3-pip \
     openslide-tools \
     python3-openslide

template.yaml

@@ -92,7 +92,7 @@ Resources:
     Properties:
       CodeUri: s3_synapse_sync/
       Handler: lambda_function.lambda_handler
-      Runtime: python3.8
+      Runtime: python3.10
       Role: !GetAtt FunctionRole.Arn
       Environment:
         Variables: