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Merge pull request NCAR#69 from climbfuji/update_gsl_develop_from_dev…
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…elop_20210331

Update gsl/develop from develop 2021/03/31
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@DomHeinzeller
DomHeinzeller authored Apr 1, 2021
2 parents f204bfd + d028ef3 commit 1b8641c
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Showing 236 changed files with 6,513 additions and 8,688 deletions.
265 changes: 139 additions & 126 deletions CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -27,12 +27,26 @@ set(INLINE_POST OFF CACHE BOOL "Enable inline post")
set(MULTI_GASES OFF CACHE BOOL "Enable MULTI_GASES")
set(OPENMP ON CACHE BOOL "Enable OpenMP threading")
set(PARALLEL_NETCDF OFF CACHE BOOL "Enable parallel NetCDF")
set(QUAD_PRECISION ON CACHE BOOL "Enable QUAD_PRECISION (for certain grid metric terms in dycore)")
set(REPRO OFF CACHE BOOL "Enable REPRO mode")
set(WW3 OFF CACHE BOOL "Enable WW3")
set(S2S OFF CACHE BOOL "Enable S2S")
set(JEDI_DRIVER OFF CACHE BOOL "Enable JEDI as top level driver")
set(DATM OFF CACHE BOOL "Enable Data Atmosphere")

# Component Options
set(FMS OFF CACHE BOOL "Enable FMS")
set(FV3 OFF CACHE BOOL "Enable FV3")
set(MOM6 OFF CACHE BOOL "Enable MOM6")
set(CICE6 OFF CACHE BOOL "Enable CICE6")
set(WW3 OFF CACHE BOOL "Enable WW3")
set(STOCH_PHYS OFF CACHE BOOL "Enable Stochastic Physics")
set(NEMSdatm OFF CACHE BOOL "Enable NEMSdatm")
set(CMEPS OFF CACHE BOOL "Enable CMEPS")
set(CDEPS OFF CACHE BOOL "Enable CDEPS")

# Valid applications and choices
list(APPEND VALID_APPS ATM ATMW S2S S2SW DATM DATM_NEMS)
set(APP NONE CACHE BOOL "Application Name")
if(NOT (APP IN_LIST VALID_APPS))
message(FATAL_ERROR "${APP} is not a valid application.\nValid Applications are: ${VALID_APPS}")
endif()

###############################################################################
### Set CMAKE_BUILD_TYPE for DEBUG mode
Expand Down Expand Up @@ -65,7 +79,6 @@ if(CMAKE_Platform)
endif()

message("")
message("32BIT ............ ${32BIT}")
message("AVX2 ............. ${AVX2}")
message("SIMDMULTIARCH ... ${SIMDMULTIARCH}")
message("DEBUG ............ ${DEBUG}")
Expand All @@ -74,11 +87,26 @@ message("INLINE_POST ...... ${INLINE_POST}")
message("MULTI_GASES ...... ${MULTI_GASES}")
message("OPENMP ........... ${OPENMP}")
message("PARALLEL_NETCDF .. ${PARALLEL_NETCDF}")
message("QUAD_PRECISION ... ${QUAD_PRECISION}")
message("REPRO ............ ${REPRO}")
message("")

# Configure selected application specific components
include(cmake/configure_apps.cmake)

# Components
message("")
message("FMS .............. ${FMS}")
message("FV3 .............. ${FV3}")
message("MOM6 ............. ${MOM6}")
message("CICE6 ............ ${CICE6}")
message("WW3 .............. ${WW3}")
message("S2S .............. ${S2S}")
message("DATM ............. ${DATM}")
message("STOCH_PHYS ....... ${STOCH_PHYS}")
message("NEMSdatm ......... ${NEMSdatm}")
message("CDEPS ............ ${CDEPS}")
message("CMEPS ............ ${CMEPS}")

# Options that applications reset
message("32BIT ............ ${32BIT}")
message("")

get_filename_component (C_COMPILER_NAME ${CMAKE_C_COMPILER} NAME)
Expand All @@ -105,7 +133,7 @@ if(OPENMP)
endif()
find_package(NetCDF REQUIRED C Fortran)
find_package(ESMF MODULE REQUIRED)
if(S2S)
if(CMEPS)
find_package(PIO REQUIRED COMPONENTS C Fortran STATIC)
endif()

Expand All @@ -125,82 +153,40 @@ target_link_libraries(nemsio::nemsio INTERFACE w3emc::w3emc_d bacio::bacio_4)
find_package(Python 3 REQUIRED COMPONENTS Interpreter)
message("Found Python: ${Python_EXECUTABLE}")

###############################################################################
### Checks
###############################################################################
if(DATM AND NOT S2S)
message(FATAL_ERROR "DATM=ON and S2S=OFF are incompatible, ABORT!")
endif()

if(S2S AND 32BIT)
message(FATAL_ERROR "S2S=ON and 32BIT=ON are incompatible, ABORT!")
endif()

###############################################################################
### FMS
###############################################################################
include(fms_files.cmake)
add_library(fms ${fms_src_files} ${fms_headers})

list(APPEND _fms_defs_public use_libMPI
use_netCDF
GFS_PHYS
INTERNAL_FILE_NML)
if(QUAD_PRECISION)
list(APPEND _fms_defs_public ENABLE_QUAD_PRECISION)
endif()

# check gettid
include(CheckFunctionExists)
check_function_exists(gettid HAVE_GETTID)
if(HAVE_GETTID)
list(APPEND _fms_defs_public HAVE_GETTID)
endif()
if(FMS)
set(GFS_PHYS ON CACHE BOOL "Enable GFS Physics")
if(NOT 32BIT)
set(64BIT ON CACHE BOOL "Enable 64-bit")
endif()

target_compile_definitions(fms PUBLIC "${_fms_defs_public}")
add_subdirectory(FMS)

if(32BIT)
list(APPEND _fms_defs_private OVERLOAD_R4
OVERLOAD_R8)
endif()

target_compile_definitions(fms PRIVATE "${_fms_defs_private}")

target_include_directories(fms PUBLIC $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/FMS/include>
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/FMS/fms>
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/FMS/fms2_io/include>
$<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/FMS/mod>
$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/FMS/mpp/include>)
target_include_directories(fms INTERFACE
$<INSTALL_INTERFACE:${CMAKE_INSTALL_PREFIX}/include>
$<INSTALL_INTERFACE:${CMAKE_INSTALL_PREFIX}/mod>)
target_link_libraries(fms PUBLIC MPI::MPI_Fortran
NetCDF::NetCDF_Fortran)
if(OpenMP_Fortran_FOUND)
target_link_libraries(fms PRIVATE OpenMP::OpenMP_Fortran)
endif()
set_target_properties(fms PROPERTIES ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/FMS)
set_target_properties(fms PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/FMS/mod)
set_target_properties(fms PROPERTIES PUBLIC_HEADER "${fms_headers}" )
if(32BIT)
add_library(fms ALIAS fms_r4)
else()
add_library(fms ALIAS fms_r8)
endif()
endif(FMS)

###############################################################################
### stochastic_physics
###############################################################################
if(NOT DATM)
if(STOCH_PHYS)
add_subdirectory(stochastic_physics)
endif()

###############################################################################
### FV3 or Data Atmosphere
### Atmosphere Components [FV3, MPAS?]
###############################################################################
if(DATM)
add_subdirectory(DATM)
else()
if(FV3)
add_subdirectory(FV3)
endif()

###############################################################################
### WW3
### Wave components [WW3]
###############################################################################
if(WW3)
if(CMAKE_Platform)
Expand All @@ -225,18 +211,39 @@ if(WW3)
WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/WW3/model/esmf
COMMAND ${CMAKE_BUILD_TOOL} WW3_PARCOMPN=4 WW3_COMP=${WW3_COMP} ww3_nemslibonly > ${CMAKE_CURRENT_BINARY_DIR}/ww3_make.log 2>&1)

set(WW3_LIBS ${CMAKE_CURRENT_SOURCE_DIR}/WW3/model/obj/libww3_multi_esmf.a)
set(WW3_LIBS ${CMAKE_CURRENT_SOURCE_DIR}/WW3/model/obj/libww3_multi_esmf.a)
endif()

###############################################################################
### S2S Components [CMEPS, MOM6, CICE]
### Marine Components [MOM6, CICE6]
###############################################################################
if(S2S)
add_subdirectory(CMEPS-interface)
if(MOM6)
add_subdirectory(MOM6-interface)
endif()

if(CICE6)
add_subdirectory(CICE-interface)
endif()

###############################################################################
### Mediator Components [CMEPS]
###############################################################################
if(CMEPS)
add_subdirectory(CMEPS-interface)
endif()

###############################################################################
### Data Components [NEMSdatm, CDEPS]
###############################################################################
if(NEMSdatm)
add_subdirectory(DATM)
endif()

if(CDEPS)
message("ADD CDEPS-interface directory")
# add_subdirectory(CDEPS-interface)
endif()

###############################################################################
### UFS Library [NEMS]
###############################################################################
Expand All @@ -263,108 +270,114 @@ configure_file(${CMAKE_CURRENT_SOURCE_DIR}/NEMS/src/ESMFConvenienceMacros.h
COPYONLY)

add_library(ufs ${_nems_srcs})
set_target_properties(ufs PROPERTIES Fortran_MODULE_DIRECTORY
${CMAKE_CURRENT_BINARY_DIR}/mod)
target_include_directories(ufs PRIVATE ${CMAKE_CURRENT_BINARY_DIR}/NEMS/src)
target_include_directories(ufs INTERFACE $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod>
$<INSTALL_INTERFACE:mod>)

list(APPEND _ufs_defs_private ESMF_VERSION_MAJOR=${ESMF_VERSION_MAJOR}
FRONT_FMS)
add_dependencies(ufs fms)
list(APPEND _ufs_defs_private ESMF_VERSION_MAJOR=${ESMF_VERSION_MAJOR})

if(DATM)
list(APPEND _ufs_defs_private FRONT_DATM=datm)
add_dependencies(ufs datatm)
else()
list(APPEND _ufs_defs_private FRONT_FV3=fv3gfs_cap_mod)
add_dependencies(ufs fv3atm)
endif()
if(JEDI_DRIVER)
list(APPEND _ufs_defs_private JEDI_DRIVER=ON)
endif()
set_target_properties(ufs PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod)
target_include_directories(ufs PRIVATE ${CMAKE_CURRENT_BINARY_DIR}/NEMS/src)

if(WW3)
add_dependencies(ufs ww3_nems)
list(APPEND _ufs_defs_private FRONT_WW3=WMESMFMD)
target_include_directories(ufs PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/WW3/model/mod)
add_dependencies(ufs ww3_nems)
target_link_libraries(ufs PUBLIC ${WW3_LIBS})
list(APPEND _ufs_libs_public ${WW3_LIBS})
endif()

target_include_directories(ufs INTERFACE $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/mod>
$<INSTALL_INTERFACE:mod>)
list(APPEND _ufs_libs_public esmf)

target_link_libraries(ufs PUBLIC esmf)
if(STOCH_PHYS)
list(APPEND _ufs_libs_public stochastic_physics)
endif()

if(DATM)
target_link_libraries(ufs PUBLIC datatm)
else()
target_link_libraries(ufs PUBLIC fv3atm)
if(FMS)
add_dependencies(ufs fms)
list(APPEND _ufs_defs_private FRONT_FMS)
endif()

if(NEMSdatm)
add_dependencies(ufs datatm)
list(APPEND _ufs_defs_private FRONT_DATM=datm)
list(APPEND _ufs_libs_public datatm)
endif()

if(FV3)
add_dependencies(ufs fv3atm)
list(APPEND _ufs_defs_private FRONT_FV3=fv3gfs_cap_mod)
list(APPEND _ufs_libs_public fv3atm)
endif()

if(MOM6)
add_dependencies(ufs mom6)
list(APPEND _ufs_defs_private FRONT_MOM6=mom_cap_mod)
list(APPEND _ufs_libs_public mom6)
endif()

if(CICE6)
add_dependencies(ufs cice)
list(APPEND _ufs_defs_private FRONT_CICE6=ice_comp_nuopc)
list(APPEND _ufs_libs_public cice)
endif()

if(S2S)
list(APPEND _ufs_defs_private FRONT_MOM6=mom_cap_mod
FRONT_CICE6=ice_comp_nuopc
CMEPS
FRONT_CMEPS=MED)
add_dependencies(ufs mom6 cice cmeps)
target_link_libraries(ufs PUBLIC mom6
cice
cmeps)
if(CMEPS)
add_dependencies(ufs cmeps)
list(APPEND _ufs_defs_private CMEPS FRONT_CMEPS=MED)
list(APPEND _ufs_libs_public cmeps)
endif()

if(CDEPS)
message("Do CDEPS things here")
endif()

target_compile_definitions(ufs PRIVATE "${_ufs_defs_private}")
target_link_libraries(ufs PUBLIC "${_ufs_libs_public}")

###############################################################################
### UFS executable
###############################################################################
add_executable(ufs_model NEMS/src/MAIN_NEMS.F90)
add_dependencies(ufs_model ufs)

list(APPEND _ufs_model_defs_private ESMF_VERSION_MAJOR=${ESMF_VERSION_MAJOR})

set_target_properties(ufs_model PROPERTIES Fortran_MODULE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod)
set_target_properties(ufs_model PROPERTIES Fortran_MODULE_DIRECTORY
${CMAKE_CURRENT_BINARY_DIR}/mod)

target_include_directories(ufs_model PRIVATE ${CMAKE_CURRENT_BINARY_DIR}/NEMS/src)

if(WW3)
list(APPEND _ufs_model_defs_private FRONT_WW3=WMESMFMD)
target_include_directories(ufs_model PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/WW3/model/mod)
add_dependencies(ufs_model ww3_nems)
endif()

target_compile_definitions(ufs_model PRIVATE "${_ufs_model_defs_private}")

if(DATM)
if(NEMSdatm)
target_link_libraries(ufs_model PUBLIC ufs w3nco::w3nco_d)
endif()

target_link_libraries(ufs_model PRIVATE ufs
esmf
NetCDF::NetCDF_Fortran
${MKL_LIB})
NetCDF::NetCDF_Fortran)

###############################################################################
### Install
###############################################################################
install(
TARGETS fms
EXPORT fms-config
LIBRARY DESTINATION lib
ARCHIVE DESTINATION lib
PUBLIC_HEADER DESTINATION include )

install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/FMS/mod DESTINATION ${CMAKE_INSTALL_PREFIX})

install(EXPORT fms-config
DESTINATION lib/cmake
)
install(
TARGETS ufs
EXPORT ufs-config
LIBRARY DESTINATION lib
ARCHIVE DESTINATION lib)
install(TARGETS ufs
EXPORT ufs-config
LIBRARY DESTINATION lib
ARCHIVE DESTINATION lib)

install(EXPORT ufs-config
DESTINATION lib/cmake)

install(DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/mod DESTINATION ${CMAKE_INSTALL_PREFIX})

install(EXPORT ufs-config
DESTINATION lib/cmake
)
###############################################################################
### Done
###############################################################################
2 changes: 1 addition & 1 deletion FMS
Submodule FMS updated 2 files
+3 −1 CHANGELOG.md
+5 −5 CMakeLists.txt
2 changes: 1 addition & 1 deletion FV3
Submodule FV3 updated 17 files
+1 −1 .gitmodules
+8 −2 CMakeLists.txt
+1 −1 atmos_cubed_sphere
+3 −2 atmos_model.F90
+0 −12 ccpp/CMakeLists.txt
+40 −18 ccpp/data/GFS_typedefs.F90
+56 −11 ccpp/data/GFS_typedefs.meta
+60 −1 ccpp/driver/GFS_diagnostics.F90
+1 −1 ccpp/framework
+1 −1 ccpp/physics
+94 −0 ccpp/suites/suite_FV3_GFS_v16_ras.xml
+0 −506 coupler_main.F90
+3 −6 io/inline_post_stub.F90
+0 −58 io/post_gfs_stub.F90
+11 −11 io/post_regional.F90
+2 −0 module_fcst_grid_comp.F90
+13 −13 stochastic_physics/stochastic_physics_wrapper.F90
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