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NGI-RNAseq v1.0

Hammarn released this 05 Apr 12:26

· 341 commits to master since this release

The pipeline has been now validated for production.
This version includes some new features:

The output from featureCounts is now merged into a single table and supplied along side the individual reports.
markDuplicates JVM memory is now automatically scaled based on the process memory
an html file with results documentation is now generated and supplied amongst the results
It's now possible to configure the pipeline for different stranded libraries with just a simple CL flag.
Additional support and documentation for other platforms than Uppmax. Inluding C3SE.
+ Numerous minor tweaks and improvements.

Assets 2