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Petab tutorial #695
Petab tutorial #695
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This includes some new stuff, so the documentary will fail until PEtab 2.0 is released. |
…keep existing compat)
…0-00-25-19-343-02029562580 CompatHelper: bump compat for NonlinearSolve to 2 for package docs, (keep existing compat)
Co-authored-by: Sam Isaacson <[email protected]>
I am not sure if that did things any better, but now ti should be on the master at lesat. |
It is still showing a ton of merged and existing code as part of this PR. |
When I try rebasing this on master it all shows up OK. I think Git have just gone bananas between this and other PRs, and most of these changes are just basically synching this with older stuff. I think the only work around would be to create a new PR. |
Closed by #701 |
Creates a tutorial on how to use PEtab (https://github.com/sebapersson/PEtab.jl/) to fit the parameters of ODE CRNs to data (adapted from that documentation to provide a shorter summary to get someone started).
What is currently missing:
PEtabOptimisationResult
sebapersson/PEtab.jl#83). When that is done, I will complete that tutorial.get_best_ps
function is not yet implemented in PEtab (but hopefully will be soon Function for retrieving a full parameter set from a calibration output sebapersson/PEtab.jl#85).