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Inverse problem doc remake and new petab tutorial #701

Merged
merged 33 commits into from
Nov 7, 2023
Merged

Inverse problem doc remake and new petab tutorial #701

merged 33 commits into from
Nov 7, 2023

Commits on Oct 28, 2023

  1. Init

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    TorkelE committed Oct 28, 2023
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  2. Update docs/src/inverse_problems/petab_ode_param_fitting.md 

    Co-authored-by: sebapersson <[email protected]>
    @TorkelE @sebapersson
    TorkelE and sebapersson committed Oct 28, 2023
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  3. Update docs/src/inverse_problems/petab_ode_param_fitting.md 

    Co-authored-by: sebapersson <[email protected]>
    @TorkelE @sebapersson
    TorkelE and sebapersson committed Oct 28, 2023
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  4. update

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    TorkelE committed Oct 28, 2023
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  5. updates

    @TorkelE
    TorkelE committed Oct 28, 2023
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  6. example networks -? Catalyst functionality

    @TorkelE
    TorkelE committed Oct 28, 2023
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  7. update project file

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    TorkelE committed Oct 28, 2023
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  8. make gilespie name uniform in example network file plot titles.

    @TorkelE
    TorkelE committed Oct 28, 2023
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  9. reference fixes

    @TorkelE
    TorkelE committed Oct 28, 2023
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Commits on Oct 29, 2023

  1. update

    @TorkelE
    TorkelE committed Oct 29, 2023
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Commits on Nov 2, 2023

  1. add error message for parametric stoichiometry example

    @isaacsas
    isaacsas committed Nov 2, 2023
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  2. add link to bug

    @isaacsas
    isaacsas committed Nov 2, 2023
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  3. codebox fix

    @TorkelE
    TorkelE committed Nov 2, 2023
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  4. cap SciMLBase due to error

    @isaacsas
    isaacsas committed Nov 2, 2023
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  5. Merge remote-tracking branch 'origin/PEtab_tutorial_2' into PEtab_tut… 

    …orial_2
    @isaacsas
    isaacsas committed Nov 2, 2023
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  6. Update docs/src/inverse_problems/petab_ode_param_fitting.md 

    Co-authored-by: Sam Isaacson <[email protected]>
    @TorkelE @isaacsas
    TorkelE and isaacsas authored Nov 2, 2023
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  7. Update docs/src/inverse_problems/petab_ode_param_fitting.md 

    Co-authored-by: Sam Isaacson <[email protected]>
    @TorkelE @isaacsas
    TorkelE and isaacsas authored Nov 2, 2023
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  8. Update docs/src/inverse_problems/petab_ode_param_fitting.md 

    Co-authored-by: Sam Isaacson <[email protected]>
    @TorkelE @isaacsas
    TorkelE and isaacsas authored Nov 2, 2023
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  9. Update docs/src/inverse_problems/petab_ode_param_fitting.md 

    Co-authored-by: Sam Isaacson <[email protected]>
    @TorkelE @isaacsas
    TorkelE and isaacsas authored Nov 2, 2023
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  10. Update docs/src/inverse_problems/petab_ode_param_fitting.md 

    Co-authored-by: Sam Isaacson <[email protected]>
    @TorkelE @isaacsas
    TorkelE and isaacsas authored Nov 2, 2023
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  11. Update docs/src/inverse_problems/petab_ode_param_fitting.md 

    Co-authored-by: Sam Isaacson <[email protected]>
    @TorkelE @isaacsas
    TorkelE and isaacsas authored Nov 2, 2023
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  12. Update docs/src/inverse_problems/petab_ode_param_fitting.md 

    Co-authored-by: Sam Isaacson <[email protected]>
    @TorkelE @isaacsas
    TorkelE and isaacsas authored Nov 2, 2023
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  13. Update docs/src/inverse_problems/petab_ode_param_fitting.md 

    Co-authored-by: Sam Isaacson <[email protected]>
    @TorkelE @isaacsas
    TorkelE and isaacsas authored Nov 2, 2023
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  14. Update docs/src/inverse_problems/petab_ode_param_fitting.md 

    Co-authored-by: Sam Isaacson <[email protected]>
    @TorkelE @isaacsas
    TorkelE and isaacsas authored Nov 2, 2023
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  15. Update docs/src/inverse_problems/petab_ode_param_fitting.md 

    Co-authored-by: Sam Isaacson <[email protected]>
    @TorkelE @isaacsas
    TorkelE and isaacsas authored Nov 2, 2023
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  16. Update docs/src/inverse_problems/petab_ode_param_fitting.md 

    Co-authored-by: Sam Isaacson <[email protected]>
    @TorkelE @isaacsas
    TorkelE and isaacsas authored Nov 2, 2023
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  17. Update docs/src/inverse_problems/petab_ode_param_fitting.md 

    Co-authored-by: Sam Isaacson <[email protected]>
    @TorkelE @isaacsas
    TorkelE and isaacsas authored Nov 2, 2023
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  18. updates

    @TorkelE
    TorkelE committed Nov 2, 2023
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  19. update

    @TorkelE
    TorkelE committed Nov 2, 2023
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Commits on Nov 3, 2023

  1. updates

    @TorkelE
    TorkelE committed Nov 3, 2023
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  2. Update docs/src/inverse_problems/petab_ode_param_fitting.md 

    Co-authored-by: Sam Isaacson <[email protected]>
    @TorkelE @isaacsas
    TorkelE and isaacsas authored Nov 3, 2023
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Commits on Nov 4, 2023

  1. rewording

    @TorkelE
    TorkelE committed Nov 4, 2023
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  2. re-rewording

    @TorkelE
    TorkelE committed Nov 4, 2023
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