-
-
Notifications
You must be signed in to change notification settings - Fork 31
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Add EnsembleProblem syntax to example #142
Open
thompsonmj
wants to merge
1
commit into
SciML:master
Choose a base branch
from
thompsonmj:patch-2
base: master
Could not load branches
Branch not found: {{ refName }}
Loading
Could not load tags
Nothing to show
Loading
Are you sure you want to change the base?
Some commits from the old base branch may be removed from the timeline,
and old review comments may become outdated.
Open
Changes from all commits
Commits
File filter
Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
You should probably add an index check https://mtk.sciml.ai/dev/basics/FAQ/#Getting-the-index-for-a-symbol in case it's reordered.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Without having dug around inside
remake
, is this something that could be handled internally there to prevent reordering? Seems dangerous to have exposure to invisible bugs like this that users wouldn't foresee unless they crossed this FAQ.There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
@ChrisRackauckas thoughts on this? ^
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I'm not sure. Right now parameters never reorder, so technically this is correct. And with states, the reordering comes with reduction, so just passing an array of the right size will throw an error. But this is something we need to be working on. If an ODEProblem has a symbolic base, we should probably require a
force=true
or something to allow raw arrays to remake.There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I don't think we should have that. If one does not want reordering, then just don't use structural_simplify. Reordering is one of the most fundamental assumptions we have in MTK. Otherwise, there is not much point in giving states names other than for convenience.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Well we'd need a
force=true
behavior internally anyways, but it would make sense to add a safety check and assume people will be using transformed systems.There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Seems to me that if you are defining your problem symbolically, and therefore are using named states and
structural_simplify
, thenremake
should require aDict
/Array{Pair}
forp
as in the system definition. This would also enhance consistency of the interface.There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
remake
should now work here with the pairs?