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SOSRA()
Describe the bug 🐞
The SOSRA() solver doesn't seem to work for non-diagonal noise problems.
Expected behavior
I expected the SOSRA() to work with non-diagonal noise as described in the docs.
Minimal Reproducible Example 👇
using StochasticDiffEq f(u, p, t) = u function g(u, p, t) return [-0.80 -0.3; -0.8 0.3] end u0 = ones(2) dt = 1//2^(4) tspan = (0., 1.) prototype = zeros(2,2) oop_prob = SDEProblem{false}(f, g, u0, tspan, noise_rate_prototype = prototype) oop_sol = solve(oop_prob, EM(), dt = dt) oop_sol = solve(oop_prob, SOSRA())
ERROR: DimensionMismatch: dimensions must match: a has dims (Base.OneTo(2), Base.OneTo(2)), must have singleton at dim 2 Stacktrace: [1] promote_shape @ .\indices.jl:183 [inlined] [2] promote_shape @ .\indices.jl:174 [inlined] [3] promote_shape(a::Vector{Float64}, b::Matrix{Float64}) @ Base .\indices.jl:169 [4] +(A::Vector{Float64}, Bs::Matrix{Float64}) @ Base .\arraymath.jl:14 [5] perform_step!(integrator::StochasticDiffEq.SDEIntegrator{…}, cache::StochasticDiffEq.ThreeStageSRAConstantCache{…}) @ StochasticDiffEq C:\Users\orjan\.julia\packages\StochasticDiffEq\M3bKo\src\perform_step\sra.jl:181 [6] solve!(integrator::StochasticDiffEq.SDEIntegrator{…}) @ StochasticDiffEq C:\Users\orjan\.julia\packages\StochasticDiffEq\M3bKo\src\solve.jl:618 [7] #__solve#107 @ C:\Users\orjan\.julia\packages\StochasticDiffEq\M3bKo\src\solve.jl:7 [inlined] [8] __solve (repeats 3 times) @ C:\Users\orjan\.julia\packages\StochasticDiffEq\M3bKo\src\solve.jl:1 [inlined] [9] __solve(prob::SDEProblem{…}, alg::SOSRA, timeseries::Vector{…}) @ StochasticDiffEq C:\Users\orjan\.julia\packages\StochasticDiffEq\M3bKo\src\solve.jl:1 [10] __solve @ C:\Users\orjan\.julia\packages\StochasticDiffEq\M3bKo\src\solve.jl:1 [inlined] [11] #solve_call#44 @ C:\Users\orjan\.julia\packages\DiffEqBase\V6SCE\src\solve.jl:612 [inlined] [12] solve_call @ C:\Users\orjan\.julia\packages\DiffEqBase\V6SCE\src\solve.jl:569 [inlined] [13] #solve_up#53 @ C:\Users\orjan\.julia\packages\DiffEqBase\V6SCE\src\solve.jl:1080 [inlined] [14] solve_up @ C:\Users\orjan\.julia\packages\DiffEqBase\V6SCE\src\solve.jl:1066 [inlined] [15] #solve#51 @ C:\Users\orjan\.julia\packages\DiffEqBase\V6SCE\src\solve.jl:1003 [inlined] [16] solve(prob::SDEProblem{…}, args::SOSRA) @ DiffEqBase C:\Users\orjan\.julia\packages\DiffEqBase\V6SCE\src\solve.jl:993 [17] top-level scope @ e:\DynamicalSystemsBase.jl\test\using StochasticDiffEq.jl:25
For in-place problem I just get that there is no noise applied?
using StochasticDiffEq f(du, u, p, t) = du .= u function g(du, u, p, t) du .= [-0.80 -0.3; -0.8 0.3] end u0 = ones(2) dt = 1//2^(4) tspan = (0., 1.) prototype = zeros(2,2) iip_prob = SDEProblem{true}(f, g, u0, tspan, noise_rate_prototype = prototype) iip_sol = solve(iip_prob, EM(), dt = dt) iip_sol = solve(iip_prob, SOSRA())
retcode: Success Interpolation: 1st order linear t: 315-element Vector{Float64}: 0.0 0.0020926751066120968 0.002538416595762327 0.003039875771056336 0.003604017343262096 0.004238676611993576 0.004952668289316491 0.005755908926304771 ⋮ 0.9800839851496779 0.9834429976234172 0.9867491652921374 0.9900961346195399 0.9934720019392905 0.9968005450348317 1.0 u: 315-element Vector{Vector{Float64}}: [1.0, 1.0] [1.0, 1.0] [1.0, 1.0] [1.0, 1.0] [1.0, 1.0] [1.0, 1.0] [1.0, 1.0] [1.0, 1.0] ⋮ [1.0, 1.0] [1.0, 1.0] [1.0, 1.0] [1.0, 1.0] [1.0, 1.0] [1.0, 1.0] [1.0, 1.0]
Environment (please complete the following information):
using Pkg; Pkg.status()
[789caeaf] StochasticDiffEq v6.67.0
using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)
[47edcb42] ADTypes v1.6.2 [7d9f7c33] Accessors v0.1.37 [79e6a3ab] Adapt v4.0.4 [66dad0bd] AliasTables v1.1.3 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.15.0 [4c555306] ArrayLayouts v1.10.2 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [2a0fbf3d] CPUSummary v0.2.6 [49dc2e85] Calculus v0.5.1 [d360d2e6] ChainRulesCore v1.24.0 [fb6a15b2] CloseOpenIntervals v0.1.13 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.0 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.15.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [187b0558] ConstructionBase v1.5.6 [adafc99b] CpuId v0.3.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.20 [e2d170a0] DataValueInterfaces v1.0.0 [2b5f629d] DiffEqBase v6.152.2 [77a26b50] DiffEqNoiseProcess v5.22.0 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [a0c0ee7d] DifferentiationInterface v0.5.11 [b4f34e82] Distances v0.10.11 [31c24e10] Distributions v0.25.109 [ffbed154] 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[2d8b4e74] LevyArea v1.0.0 [d3d80556] LineSearches v7.3.0 [7ed4a6bd] LinearSolve v2.31.2 [2ab3a3ac] LogExpFunctions v0.3.28 [bdcacae8] LoopVectorization v0.12.171 [d8e11817] MLStyle v0.4.17 [1914dd2f] MacroTools v0.5.13 [d125e4d3] ManualMemory v0.1.8 [bb5d69b7] MaybeInplace v0.1.3 [e1d29d7a] Missings v1.2.0 [46d2c3a1] MuladdMacro v0.2.4 [d41bc354] NLSolversBase v7.8.3 [2774e3e8] NLsolve v4.5.1 [77ba4419] NaNMath v1.0.2 [8913a72c] NonlinearSolve v3.13.1 [6fe1bfb0] OffsetArrays v1.14.1 [429524aa] Optim v1.9.4 [bac558e1] OrderedCollections v1.6.3 [1dea7af3] OrdinaryDiffEq v6.87.0 [90014a1f] PDMats v0.11.31 [65ce6f38] PackageExtensionCompat v1.0.2 [d96e819e] Parameters v0.12.3 [e409e4f3] PoissonRandom v0.4.4 [f517fe37] Polyester v0.7.15 [1d0040c9] PolyesterWeave v0.2.2 [85a6dd25] PositiveFactorizations v0.2.4 [d236fae5] PreallocationTools v0.4.23 [aea7be01] PrecompileTools v1.2.1 [21216c6a] Preferences v1.4.3 [43287f4e] PtrArrays v1.2.0 [1fd47b50] QuadGK v2.10.1 [74087812] Random123 v1.7.0 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v1.3.1 [789caeaf] StochasticDiffEq v6.67.0 [7792a7ef] StrideArraysCore v0.5.7 [2efcf032] SymbolicIndexingInterface v0.3.27 [3783bdb8] TableTraits v1.0.1 [bd369af6] Tables v1.12.0 [8290d209] ThreadingUtilities v0.5.2 [a759f4b9] TimerOutputs v0.5.24 [d5829a12] TriangularSolve v0.2.1 [410a4b4d] Tricks v0.1.9 [781d530d] TruncatedStacktraces v1.4.0 [3a884ed6] UnPack v1.0.2 [3d5dd08c] VectorizationBase v0.21.70 [19fa3120] VertexSafeGraphs v0.2.0 [1d5cc7b8] IntelOpenMP_jll v2024.2.0+0 [856f044c] MKL_jll v2024.2.0+0 [efe28fd5] OpenSpecFun_jll v0.5.5+0 [f50d1b31] Rmath_jll v0.4.2+0 [1317d2d5] oneTBB_jll v2021.12.0+0 [0dad84c5] ArgTools v1.1.2 [56f22d72] Artifacts v1.11.0 [2a0f44e3] Base64 v1.11.0 [ade2ca70] Dates v1.11.0 [8ba89e20] Distributed v1.11.0 [f43a241f] Downloads v1.6.0 [7b1f6079] FileWatching v1.11.0 [9fa8497b] Future v1.11.0 [b77e0a4c] InteractiveUtils v1.11.0 [4af54fe1] LazyArtifacts v1.11.0 [b27032c2] LibCURL v0.6.4 [76f85450] LibGit2 v1.11.0 [8f399da3] Libdl v1.11.0 [37e2e46d] LinearAlgebra v1.11.0 [56ddb016] Logging v1.11.0 [d6f4376e] Markdown v1.11.0 [a63ad114] Mmap v1.11.0 [ca575930] NetworkOptions v1.2.0 [44cfe95a] Pkg v1.11.0 [de0858da] Printf v1.11.0 [9a3f8284] Random v1.11.0 [ea8e919c] SHA v0.7.0 [9e88b42a] Serialization v1.11.0 [1a1011a3] SharedArrays v1.11.0 [6462fe0b] Sockets v1.11.0 [2f01184e] SparseArrays v1.11.0 [4607b0f0] SuiteSparse [fa267f1f] TOML v1.0.3 [a4e569a6] Tar v1.10.0 [8dfed614] Test v1.11.0 [cf7118a7] UUIDs v1.11.0 [4ec0a83e] Unicode v1.11.0 [e66e0078] CompilerSupportLibraries_jll v1.1.1+0 [deac9b47] LibCURL_jll v8.6.0+0 [e37daf67] LibGit2_jll v1.7.2+0 [29816b5a] LibSSH2_jll v1.11.0+1 [c8ffd9c3] MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.1+2 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.10.1+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2
Julia Version 1.10.4 Commit 48d4fd4843 (2024-06-04 10:41 UTC) Build Info: Official https://julialang.org/ release Platform Info: OS: Windows (x86_64-w64-mingw32) CPU: 12 × AMD Ryzen 5 5600X 6-Core Processor WORD_SIZE: 64 LIBM: libopenlibm LLVM: libLLVM-15.0.7 (ORCJIT, znver3) Threads: 10 default, 0 interactive, 5 GC (on 12 virtual cores) Environment: JULIA_PKG_PRESERVE_TIERED_INSTALLED = true JULIA_EDITOR = code JULIA_NUM_THREADS = 10
Additional context
Add any other context about the problem here.
The text was updated successfully, but these errors were encountered:
CorrelatedWienerProcess
CoupledSDEs
trajectory
Handle non-diagonal noise in out of place SRA
e4ed586
Fixes #578. All of the other convergence tests were in place but the non-diagonal case was just missing a few little bits. Supersedes #587
Successfully merging a pull request may close this issue.
Describe the bug 🐞
The
SOSRA()
solver doesn't seem to work for non-diagonal noise problems.Expected behavior
I expected the
SOSRA()
to work with non-diagonal noise as described in the docs.Minimal Reproducible Example 👇
For in-place problem I just get that there is no noise applied?
Environment (please complete the following information):
using Pkg; Pkg.status()
using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)
Additional context
Add any other context about the problem here.
The text was updated successfully, but these errors were encountered: