Skip to content

SiyuanHuang1/ST_Analysis_Handbook

Repository files navigation

A Guide to the Analysis of Spatial Transcriptomics

HSY 2023-12-31

该文档涉及空间转录组的几大分析板块,旨在为生物或医学背景的科研工作者提供专业的生物信息分析指南。

为了实现分析的可重复性,以下示例尽可能选择公开可获取的数据。

10x Visium

1. Standard pipeline based on Seurat

Seurat_pipeline

2. Spatially-variable genes detection

SVG_detection

3. Integration with single-cell RNA-seq data

Integration_with_SC

4. Integration of multiple slices

NanoString

Citation

这篇文档作为我们课题组所撰写综述的一部分,丰富了综述的内容,为读者提供了一个全面了解空间转录组的参考。如果我们的综述、文档对您的研究工作有所帮助,欢迎引用我们的综述: Huang, S., Ouyang, L., Tang, J., Qian, K., Chen, X., Xu, Z., Ming, J., & Xi, R. (2024). Spatial transcriptomics: a new frontier in cancer research. Clinical Cancer Bulletin, 3(1), 13.

About

A Guide to the Analysis of Spatial Transcriptomics

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages