Open source version of Northwestern University Core Facility Management Software
As you pull in new features/bug fixes from open, please keep up with the CHANGELOG to see changes that may break your fork and optional/required rake tasks you may want to run.
Welcome to NUcore! This guide will help you get a development environment up and running.
We recommend running within a docker environment. Benefits:
- All daemons, processes are running at all times (easier to develop features)
To do this:
- Install Docker and Docker Compose
- Run
./docker-setup.sh
. This sets up yourdatabase.yml
andsecrets.yml
files. It also does an intialbundle install
. - The output of the previous set is a randomly generated secret. Copy and paste it into your
secrets.yml
file as thesecret_key_base
. - This will also finish setting up the database
- Seed the database with demo data (optional)
docker-compose run app bundle exec rake demo:seed
- Run
docker-compose up
- Open http://localhost:3000
If you seeded the demo data, you can log in with [email protected]/password
We use mailcatcher as an SMTP server and web client. Visit http://localhost:1080.
- Rails Console:
docker-compose exec app bundle exec rails c
- Command line in the container:
docker-compose exec app bash
- Running tests: Get a command line in the container and
bundle exec rspec
It makes a few assumptions:
- You write code on a Mac.
- You have a running Oracle or MySQL instance with two brand new databases. (Oracle setup instructions here.)
- You have the following installed:
-
Download the project code from Github
git clone [email protected]:tablexi/nucore-open.git nucore
-
Install dependencies
cd nucore bundle install
-
Configure your databases
# For oracle, use config/database.yml.oracle.template cp config/database.yml.mysql.template config/database.yml
Edit the adapter, database, username, and password settings for both the development and test DBs to match your database instance
-
Configure your secrets
cp config/secrets.yml.template config/secrets.yml
rake secret
- Paste the output from
rake secret
intoconfig/secrets.yml
for bothdevelopment/secret_key_base
andtest/secret_key_base
-
Set up databases
rake db:create rake db:schema:load rake db:seed
Known issue: if you run db:setup
or all three in one rake command, the next time you run db:migrate
, you will receive a Table 'splits' already exists
error. Use the separate commands instead.
-
Seed your development database
rake demo:seed
-
Configure your file storage
By default, files are stored on the local filesystem. If you wish to use Amazon's S3 instead, enable S3 in your environment by updateing the local settings override file such as
config/settings/development.local.yml
orconfig/settings/production.local.yml
. Uncomment the section underpaperclip
:paperclip: aws_access_key_id: <%= ENV.fetch("AWS_ACCESS_KEY", "Your-Key-Here") %> aws_secret_access_key: <ENV.fetch("AWS_SECRET_ACCESS_KEY", "Your-Key-Here") %> ...
Then add your credentials to the ENV or
secrets.yml
.See
migrating_to_s3.md
for more info. -
Start your server
bin/rails s
-
Log in
Visit http://localhost:3000
demo:seed
creates several users with various permissions. All users have the default password ofpassword
Email/username Role [email protected] Admin [email protected] PI [email protected] Normal User [email protected] Facility Staff [email protected] Facility Director -
Play around! You're running NUcore!
-
Run
delayed_job
to support in-browser email previews.Run delayed jobs indefinitely in the background:
./script/delayed_job start
Or run delayed jobs once for one-off jobs:
./script/delayed_job run
NUcore uses Rspec to run tests. Try any of the following from NUcore's root directory.
-
To run all tests (this will take awhile!)
rake spec
-
To run just the model tests
rake spec:models
-
To run just the controller tests
rake spec:controllers
You can run specs in parallel during local development using the parallel_tests
gem.
-
Create additional databases:
rake parallel:create
-
Run migrations (only needed if building from scratch):
rake parallel:create
OR
rake parallel:load_schema
-
Copy development schema (repeat after migrations):
rake parallel:prepare
-
Run tests:
rake parallel:spec
-
Example RegEx patterns (ZSH users may require putting rake task in quotes to support args):
rake parallel:spec[^spec/requests] # every spec file in spec/requests folder rake parallel:spec[user] # run users_controller + user_helper + user specs rake parallel:spec['user|instrument'] # run user and product related specs rake parallel:spec['spec\/(?!features)'] # run RSpec tests except the tests in spec/features
The following modules are provided as optional features via
Rails engines. These are enabled
by adding the appropriate engine to your Gemfile (all are on by default). They
exist in the vendor/engines
directory.
- Accept Credit Cards & Purchase Orders (c2po)
- Connect to Dataprobe Power Relays (dataprobe)
- Link orders together as a Project (projects)
- Sanger Sequencing order form and well plate management
- Split charges between different accounts
- Authenticate against an LDAP server
- Authenticate with SSO via SAML
Engine-specific migrations should live in the engine's db/migrate
directory and
use an engine initializer to add that path to the list of paths Rails checks. If
you need to disable an engine, you can undo all of the engine's migrations with
the rake engines:db:migrate_down[ENGINE_NAME]
task.
There are valuable resources in the NUcore's doc directory.
-
Want to conform to the project's established coding standards? See coding_standards.md
-
Want to know more about the instrument pricing model? See instrument_pricing.md
-
Need to move changes between nucore-open and your fork? See HOWTO_forks.txt
-
Need help getting Oracle running on your Mac? See HOWTO_oracle.md
-
Want to authenticate users against your institution's LDAP server? See the
ldap_authentication
engine -
Need to use a 3rd party service with your NUcore? See HOWTO_external_services.txt
-
Need to asynchronously monitor some aspect of NUcore? See HOWTO_daemons.txt
-
Want to integrate with Form.io? See form.io_tips_and_tricks