RIMA tutorial:

https://liulab-dfci.github.io/RIMA/

Note

if you want to run cibersort in immune infitration module, you should download the source code CIBERSORT.R and signature matrix LM22.txt from CIBERSORT website.

Make sure you should download CIBERSORT.R into RIMA_pipeline/src/immune_infiltration/ folder;
LM22.txt shoube be in RIMA_pipeline/static/cibersort folder.

Support

Create a GitHub issue.

Or contact main developers:
Yang Liu: [email protected]
Lin Yang: [email protected]