This repository contains data and scripts for the analysis of the protein structure landscape described in:
Szczerbiak P, Szydlowski L, Wydmański W, Renfrew PD, Koehler Leman J, Kosciolek T. Large protein databases reveal structural complementarity and functional locality. bioRxiv, https://doi.org/10.1101/2024.08.14.607935 (2024).
The web server is available at: https://protein-structure-landscape.sano.science.
It currently allows for:
- structure search by ID
- structure visualization with PyMOL
- filtering based on:
- database (AFDB, ESMAtlas, MIP)
- superCOG functional category
- protein length
- pLDDT (for AFDB models only)