multimedia/ogmtools: fix build on SmartOS #125
Closed
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
jperkin
pushed a commit
that referenced
this pull request
Dec 9, 2013
What's new in psycopg 2.4.6
---------------------------
- Fixed 'cursor()' arguments propagation in connection subclasses
and overriding of the 'cursor_factory' argument. Thanks to
Corry Haines for the report and the initial patch (ticket #105).
- Dropped GIL release during string adaptation around a function call
invoking a Python API function, which could cause interpreter crash.
Thanks to Manu Cupcic for the report (ticket #110).
- Close a green connection if there is an error in the callback.
Maybe a harsh solution but it leaves the program responsive
(ticket #113).
- 'register_hstore()', 'register_composite()', 'tpc_recover()' work with
RealDictConnection and Cursor (ticket #114).
- Fixed broken pool for Zope and connections re-init across ZSQL methods
in the same request (tickets #123, #125, #142).
- connect() raises an exception instead of swallowing keyword arguments
when a connection string is specified as well (ticket #131).
- Discard any result produced by 'executemany()' (ticket #133).
- Fixed pickling of FixedOffsetTimezone objects (ticket #135).
- Release the GIL around PQgetResult calls after COPY (ticket #140).
- Fixed empty strings handling in composite caster (ticket #141).
- Fixed pickling of DictRow and RealDictRow objects.
jperkin
pushed a commit
that referenced
this pull request
Dec 9, 2013
============= - Tig now has its own tag on Stack Overflow, where users are invited to ask questions: http://stackoverflow.com/questions/tagged/tig Improvements: - Make tig prompt commands bindable to keys. For example: `bind diff F :set diff-options = --full-diff`. (GH #69, #116) - Add a diff-options setting for specifying default diff options. Example: `set diff-options = --patience`. (GH #116) - Options in diff-options and blame-options matching tig browsing state variables are replaced. - Show diff stats as wide as the terminal. (GH #109) - Show line numbers in the branch view. (GH #135) - Add toggles for showing author email or email user names. (GH #115) - Open editor at the selected line by prefixing the file argument with `+<lineno>`. Tested in vi, vim, emacs, nano, gedit, geany. Disable by adding `set editor-line-number = no` to ~/.tigrc. (GH #118, #119) - Add toggle-files to control whether to show full commit diff or only the diff concerning the currently selected file, e.g. for blame. - Optionally highlight exceeding characters in long commit titles. The default title max width is 50 characters. Customize using: `set title-overflow = 50` (GH #125) - Add +ESC key bindings. Example: `bind generic ^[v move-page-up` (GH #120) - Create temporary files in TMPDIR, TEMP, or TMP before defaulting to /tmp. - Reenable `tig log` as a subcommand. (GH #146) - Enable tilde expansion in ~/.tigrc "source" commands. (GH #168) - Introduce the stash view, bound to the 'y' keybinding. (GH #169, #174) Bug fixes: - Fix blame and status to work in directories starting with a dot. (GH #172) - Reload current branch name when reloading the status view. (GH #93) - Fix compile errors on old Solaris. (GH #97) - Reload HEAD info when reloading the stage view. (GH #104, #93) - Fix disappearing branch labels after external commands. (GH #148) - Fix diff view display for staged/unstaged changes when using 'd'. - Fix display of status messages when toggling view options. (GH #111) - Fix illegal memory access. (GH #98) - Fix display of all branches label in repos with short branch names. - Fix rendering glitch for branch names. - Do not apply diff styling to untracked files in the stage view. (GH #153) - Fix tree indentation for entries containing combining characters. (GH #170) - Ignore unrepresentable characters when transliterating text for rendering. - Transliterate text to output encoding before trimming it to avoid misalignment. (GH #86) - Introduce a more natural context-sensitive log display. (GH #155)
|
Fixed upstream, thanks! |
jperkin
pushed a commit
that referenced
this pull request
Jan 6, 2014
Release 3.1.1 - 2013/12/29 -------------------------- Improvements ^^^^^^^^^^^^ * [deb] Refined Groonga packages for Debian policy. [groonga-dev,01930] [Suggested by Hideki Yamane] * [deb] Dropped Debian 6.0 (squeeze) support. * [deb] Dropped Ubuntu 10.04 (lucid) support. * Supported :doc:`/reference/functions/geo_in_rectangle` in the whole world. * Supported error report when failed to casting invalid value of geo point type. * Exported some macros which is used for accessing pseudo column names. [groonga-dev,1999] [Suggested by whombx] * [doc] Refined drilldown documentation. [Reported by @Yahppo] * Supported :doc:`/reference/functions/between` function which is used for filtering the column value in specific range. * [doc] Updated Travis CI envrinment information. [Patch by cosmo0920] * [rpm][fedora] Dropped Fedora 19. * [rpm][fedora] Supported Fedora 20. * [doc] Updated "Groonga" notation. [Patch by cosmo0920] [GitHub#122, #123, #124, #125, #125, #126, #127, #128, #129, #130, #131, #131, #132, #133, #134] Fixes ^^^^^ * [munin] Fixed the wrong port number which is specified for GQTP. * [geo_in_circle] Fixed a bug that if you specify "LONGITUDExLATITUDE" as the 3rd argument of :doc:`/reference/functions/geo_in_circle`, Groonga crashes. Thanks ^^^^^^ * Hideki Yamane * whombx * @yappo * cosmo0920
jperkin
pushed a commit
that referenced
this pull request
Jan 21, 2014
============= - Tig now has its own tag on Stack Overflow, where users are invited to ask questions: http://stackoverflow.com/questions/tagged/tig Improvements: - Make tig prompt commands bindable to keys. For example: `bind diff F :set diff-options = --full-diff`. (GH #69, #116) - Add a diff-options setting for specifying default diff options. Example: `set diff-options = --patience`. (GH #116) - Options in diff-options and blame-options matching tig browsing state variables are replaced. - Show diff stats as wide as the terminal. (GH #109) - Show line numbers in the branch view. (GH #135) - Add toggles for showing author email or email user names. (GH #115) - Open editor at the selected line by prefixing the file argument with `+<lineno>`. Tested in vi, vim, emacs, nano, gedit, geany. Disable by adding `set editor-line-number = no` to ~/.tigrc. (GH #118, #119) - Add toggle-files to control whether to show full commit diff or only the diff concerning the currently selected file, e.g. for blame. - Optionally highlight exceeding characters in long commit titles. The default title max width is 50 characters. Customize using: `set title-overflow = 50` (GH #125) - Add +ESC key bindings. Example: `bind generic ^[v move-page-up` (GH #120) - Create temporary files in TMPDIR, TEMP, or TMP before defaulting to /tmp. - Reenable `tig log` as a subcommand. (GH #146) - Enable tilde expansion in ~/.tigrc "source" commands. (GH #168) - Introduce the stash view, bound to the 'y' keybinding. (GH #169, #174) Bug fixes: - Fix blame and status to work in directories starting with a dot. (GH #172) - Reload current branch name when reloading the status view. (GH #93) - Fix compile errors on old Solaris. (GH #97) - Reload HEAD info when reloading the stage view. (GH #104, #93) - Fix disappearing branch labels after external commands. (GH #148) - Fix diff view display for staged/unstaged changes when using 'd'. - Fix display of status messages when toggling view options. (GH #111) - Fix illegal memory access. (GH #98) - Fix display of all branches label in repos with short branch names. - Fix rendering glitch for branch names. - Do not apply diff styling to untracked files in the stage view. (GH #153) - Fix tree indentation for entries containing combining characters. (GH #170) - Ignore unrepresentable characters when transliterating text for rendering. - Transliterate text to output encoding before trimming it to avoid misalignment. (GH #86) - Introduce a more natural context-sensitive log display. (GH #155)
jperkin
pushed a commit
that referenced
this pull request
Jan 21, 2014
Release 3.1.1 - 2013/12/29 -------------------------- Improvements ^^^^^^^^^^^^ * [deb] Refined Groonga packages for Debian policy. [groonga-dev,01930] [Suggested by Hideki Yamane] * [deb] Dropped Debian 6.0 (squeeze) support. * [deb] Dropped Ubuntu 10.04 (lucid) support. * Supported :doc:`/reference/functions/geo_in_rectangle` in the whole world. * Supported error report when failed to casting invalid value of geo point type. * Exported some macros which is used for accessing pseudo column names. [groonga-dev,1999] [Suggested by whombx] * [doc] Refined drilldown documentation. [Reported by @Yahppo] * Supported :doc:`/reference/functions/between` function which is used for filtering the column value in specific range. * [doc] Updated Travis CI envrinment information. [Patch by cosmo0920] * [rpm][fedora] Dropped Fedora 19. * [rpm][fedora] Supported Fedora 20. * [doc] Updated "Groonga" notation. [Patch by cosmo0920] [GitHub#122, #123, #124, #125, #125, #126, #127, #128, #129, #130, #131, #131, #132, #133, #134] Fixes ^^^^^ * [munin] Fixed the wrong port number which is specified for GQTP. * [geo_in_circle] Fixed a bug that if you specify "LONGITUDExLATITUDE" as the 3rd argument of :doc:`/reference/functions/geo_in_circle`, Groonga crashes. Thanks ^^^^^^ * Hideki Yamane * whombx * @yappo * cosmo0920
jperkin
pushed a commit
that referenced
this pull request
Jan 21, 2014
FITS (Flexible Image Transport System) is a data format most used in astronomy.
PyFITS is a Python module for reading, writing, and manipulating FITS files.
The module uses Python's object-oriented features to provide quick, easy, and
efficient access to FITS files. The use of Python's array syntax enables
immediate access to any FITS extension, header cards, or data items.
Changes to 2.4.0 (in py-pyfits):
Changelog
===========
3.2 (2013-11-26)
----------------
Highlights
^^^^^^^^^^
- Rewrote CFITSIO-based backend for handling tile compression of FITS files.
It now uses a standard CFITSIO instead of heavily modified pieces of CFITSIO
as before. PyFITS ships with its own copy of CFITSIO v3.35 which supports
the latest version of the Tiled Image Convention (v2.3), but system
packagers may choose instead to strip this out in favor of a
system-installed version of CFITSIO. Earlier versions may work, but nothing
earlier than 3.28 has been tested yet. (#169)
- Added support for reading and writing tables using the Q format for columns.
The Q format is identical to the P format (variable-length arrays) except
that it uses 64-bit integers for the data descriptors, allowing more than
4 GB of variable-length array data in a single table. (#160)
- Added initial support for table columns containing pseudo-unsigned integers.
This is currently enabled by using the ``uint=True`` option when opening
files; any table columns with the correct BZERO value will be interpreted
and returned as arrays of unsigned integers.
- Some refactoring of the table and ``FITS_rec`` modules in order to better
separate the details of the FITS binary and ASCII table data structures from
the HDU data structures that encapsulate them. Most of these changes should
not be apparent to users (but see API Changes below).
API Changes
^^^^^^^^^^^
- Assigning to values in ``ColDefs.names``, ``ColDefs.formats``,
``ColDefs.nulls`` and other attributes of ``ColDefs`` instances that return
lists of column properties is no longer supported. Assigning to those lists
will no longer update the corresponding columns. Instead, please just
modify the ``Column`` instances directly (``Column.name``, ``Column.null``,
etc.)
- The ``pyfits.new_table`` function is marked "pending deprecation". This
does not mean it will be removed outright or that its functionality has
changed. It will likely be replaced in the future for a function with
similar, if not subtly different functionality. A better, if not slightly
more verbose approach is to use ``pyfits.FITS_rec.from_columns`` to create
a new ``FITS_rec`` table--this has the same interface as
``pyfits.new_table``. The difference is that it returns a plan ``FITS_rec``
array, and not an HDU instance. This ``FITS_rec`` object can then be used
as the data argument in the constructors for ``BinTableHDU`` (for binary
tables) or ``TableHDU`` (for ASCII tables). This is analogous to creating
an ``ImageHDU`` by passing in an image array.
``pyfits.FITS_rec.from_columns`` is just a simpler way of creating a
FITS-compatible recarray from a FITS column specification.
- The ``updateHeader``, ``updateHeaderData``, and ``updateCompressedData``
methods of the ``CompDataHDU`` class are pending deprecation and moved to
internal methods. The operation of these methods depended too much on
internal state to be used safely by users; instead they are invoked
automatically in the appropriate places when reading/writing compressed image
HDUs.
- The ``CompDataHDU.compData`` attribute is pending deprecation in favor of
the clearer and more PEP-8 compatible ``CompDataHDU.compressed_data``.
- The constructor for ``CompDataHDU`` has been changed to accept new keyword
arguments. The new keyword arguments are essentially the same, but are in
underscore_separated format rather than camelCase format. The old arguments
are still pending deprecation.
- The internal attributes of HDU classes ``_hdrLoc``, ``_datLoc``, and
``_datSpan`` have been replaced with ``_header_offset``, ``_data_offset``,
and ``_data_size`` respectively. The old attribute names are still pending
deprecation. This should only be of interest to advanced users who have
created their own HDU subclasses.
- The following previously deprecated functions and methods have been removed
entirely: ``createCard``, ``createCardFromString``, ``upperKey``,
``ColDefs.data``, ``setExtensionNameCaseSensitive``, ``_File.getfile``,
``_TableBaseHDU.get_coldefs``, ``Header.has_key``, ``Header.ascardlist``.
If you run your code with a previous version of PyFITS (>= 3.0, < 3.2) with
the ``python -Wd`` argument, warnings for all deprecated interfaces still in
use will be displayed.
- Interfaces that were pending deprecation are now fully deprecated. These
include: ``create_card``, ``create_card_from_string``, ``upper_key``,
``Header.get_history``, and ``Header.get_comment``.
- The ``.name`` attribute on HDUs is now directly tied to the HDU's header, so
that if ``.header['EXTNAME']`` changes so does ``.name`` and vice-versa.
- The ``pyfits.file.PYTHON_MODES`` constant dict was renamed to
``pyfits.file.PYFITS_MODES`` which better reflects its purpose. This is
rarely used by client code, however. Support for the old name will be
removed by PyFITS 3.4.
Other Changes and Additions
^^^^^^^^^^^^^^^^^^^^^^^^^^^
- The new compression code also adds support for the ZQUANTIZ and ZDITHER0
keywords added in more recent versions of this FITS Tile Compression spec.
This includes support for lossless compression with GZIP. (#198) By default
no dithering is used, but the ``SUBTRACTIVE_DITHER_1`` and
``SUBTRACTIVE_DITHER_2`` methods can be enabled by passing the correct
constants to the ``quantize_method`` argument to the ``CompImageHDU``
constuctor. A seed can be manually specified, or automatically generated
using either the system clock or checksum-based methods via the
``dither_seed`` argument. See the documentation for ``CompImageHDU`` for
more details. (#198) (spacetelescope/PYFITS#32)
- Images compressed with the Tile Compression standard can now be larger than
4 GB through support of the Q format. (#159)
- All HDUs now have a ``.ver`` ``.level`` attribute that returns the value of
the EXTVAL and EXTLEVEL keywords from that HDU's header, if the exist. This
was added for consistency with the ``.name`` attribute which returns the
EXTNAME value from the header.
- Then ``Column`` and ``ColDefs`` classes have new ``.dtype`` attributes
which give the Numpy dtype for the column data in the first case, and the
full Numpy compound dtype for each table row in the latter case.
- There was an issue where new tables created defaulted the values in all
string columns to '0.0'. Now string columns are filled with empty strings
by default--this seems a less surprising default, but it may cause
differences with tables created with older versions of PyFITS.
- Improved round-tripping and preservation of manually assigned column
attributes (``TNULLn``, ``TSCALn``, etc.) in table HDU headers.
(astropy/astropy#996)
Bug Fixes
^^^^^^^^^
- Binary tables containing compressed images may, optionally, contain other
columns unrelated to the tile compression convention. Although this is an
uncommon use case, it is permitted by the standard. (#159)
- Reworked some of the file I/O routines to allow simpler, more consistent
mapping between OS-level file modes ('rb', 'wb', 'ab', etc.) and the more
"PyFITS-specific" modes used by PyFITS like "readonly" and "update".
That is, if reading a FITS file from an open file object, it doesn't matter
as much what "mode" it was opened in so long as it has the right
capabilities (read/write/etc.) Also works around bugs in the Python io
module in 2.6+ with regard to file modes. (spacetelescope/PyFITS#33)
- Fixed an obscure issue that can occur on systems that don't have flush to
memory-mapped files implemented (namely GNU Hurd). (astropy/astropy#968)
3.1.3 (2013-11-26)
------------------
- Disallowed assigning NaN and Inf floating point values as header values,
since the FITS standard does not define a way to represent them in. Because
this is undefined, the previous behavior did not make sense and produced
invalid FITS files. (spacetelescope/PyFITS#11)
- Added a workaround for a bug in 64-bit OSX that could cause truncation when
writing files greater than 2^32 bytes in size. (spacetelescope/PyFITS#28)
- Fixed a long-standing issue where writing binary tables did not correctly
write the TFORMn keywords for variable-length array columns (they ommitted
the max array length parameter of the format). This was thought fixed in
v3.1.2, but it was only fixed there for compressed image HDUs and not for
binary tables in general.
- Fixed an obscure issue that can occur on systems that don't have flush to
memory-mapped files implemented (namely GNU Hurd). (Backported from 3.2)
3.0.12 (2013-11-26)
-------------------
- Disallowed assigning NaN and Inf floating point values as header values,
since the FITS standard does not define a way to represent them in. Because
this is undefined, the previous behavior did not make sense and produced
invalid FITS files. (Backported from 3.1.3)
- Added a workaround for a bug in 64-bit OSX that could cause truncation when
writing files greater than 2^32 bytes in size. (Backported from 3.1.3)
- Fixed a long-standing issue where writing binary tables did not correctly
write the TFORMn keywords for variable-length array columns (they ommitted
the max array length parameter of the format). This was thought fixed in
v3.1.2, but it was only fixed there for compressed image HDUs and not for
binary tables in general. (Backported from 3.1.3)
- Fixed an obscure issue that can occur on systems that don't have flush to
memory-mapped files implemented (namely GNU Hurd). (Backported from 3.2)
3.1.2 (2013-04-22)
------------------
- When an error occurs opening a file in fitsdiff the exception message will
now at least mention which file had the error. (#168)
- Fixed support for opening gzipped FITS files by filename in a writeable mode
(PyFITS has supported writing to gzip files for some time now, but only
enabled it when GzipFile objects were passed to ``pyfits.open()`` due to
some legacy code preventing full gzip support. (#195)
- Added a more helpful error message in the case of malformatted FITS files
that contain non-float NULL values in an ASCII table but are missing the
required TNULLn keywords in the header. (#197)
- Fixed an (apparently long-standing) issue where writing compressed images
did not correctly write the TFORMn keywords for variable-length array
columns (they ommitted the max array length parameter of the format). (#199)
- Slightly refactored how tables containing variable-length array columns are
handled to add two improvements: Fixes an issue where accessing the data
after a call to the `pyfits.getdata` convenience function caused an
exception, and allows the VLA data to be read from an existing mmap of the
FITS file. (#200)
- Fixed a bug that could occur when opening a table containing
multi-dimensional columns (i.e. via the TDIMn keyword) and then writing it
out to a new file. (#201)
- Added use of the console_scripts entry point to install the fitsdiff and
fitscheck scripts, which if nothing else provides better Windows support.
The generated scripts now override the ones explicitly defined in the
scripts/ directory (which were just trivial stubs to begin with). (#202)
- Fixed a bug on Python 3 where attempting to open a non-existent file on
Python 3 caused a seemingly unrelated traceback. (#203)
- Fixed a bug in fitsdiff that reported two header keywords containing NaN
as value as different. (#204)
- Fixed an issue in the tests that caused some tests to fail if pyfits is
installed with read-only permissions. (#208)
- Fixed a bug where instantiating a ``BinTableHDU`` from a numpy array
containing boolean fields converted all the values to ``False``. (#215)
- Fixed an issue where passing an array of integers into the constructor of
``Column()`` when the column type is floats of the same byte width caused the
column array to become garbled. (#218)
- Fixed inconsistent behavior in creating CONTINUE cards from byte strings
versus unicode strings in Python 2--CONTINUE cards can now be created
properly from unicode strings (so long as they are convertable to ASCII).
(spacetelescope/PyFITS#1)
- Fixed a couple cases where creating a new table using TDIMn in some of the
columns could caused a crash. (spacetelescope/PyFITS#3)
- Fixed a bug in parsing HIERARCH keywords that do not have a space after
the first equals sign (before the value). (spacetelescope/PyFITS#5)
- Prevented extra leading whitespace on HIERARCH keywords from being treated
as part of the keyword. (spacetelescope/PyFITS#6)
- Fixed a bug where HIERARCH keywords containing lower-case letters was
mistakenly marked as invalid during header validation.
(spacetelescope/PyFITS#7)
- Fixed an issue that was ancillary to (spacetelescope/PyFITS#7) where the
``Header.index()`` method did not work correctly with HIERARCH keywords
containing lower-case letters.
3.0.11 (2013-04-17)
-------------------
- Fixed support for opening gzipped FITS files by filename in a writeable mode
(PyFITS has supported writing to gzip files for some time now, but only
enabled it when GzipFile objects were passed to ``pyfits.open()`` due to
some legacy code preventing full gzip support. Backported from 3.1.2. (#195)
- Added a more helpful error message in the case of malformatted FITS files
that contain non-float NULL values in an ASCII table but are missing the
required TNULLn keywords in the header. Backported from 3.1.2. (#197)
- Fixed an (apparently long-standing) issue where writing compressed images did
not correctly write the TFORMn keywords for variable-length array columns
(they ommitted the max array length parameter of the format). Backported from
3.1.2. (#199)
- Slightly refactored how tables containing variable-length array columns are
handled to add two improvements: Fixes an issue where accessing the data
after a call to the `pyfits.getdata` convenience function caused an
exception, and allows the VLA data to be read from an existing mmap of the
FITS file. Backported from 3.1.2. (#200)
- Fixed a bug that could occur when opening a table containing
multi-dimensional columns (i.e. via the TDIMn keyword) and then writing it
out to a new file. Backported from 3.1.2. (#201)
- Fixed a bug on Python 3 where attempting to open a non-existent file on
Python 3 caused a seemingly unrelated traceback. Backported from 3.1.2.
(#203)
- Fixed a bug in fitsdiff that reported two header keywords containing NaN
as value as different. Backported from 3.1.2. (#204)
- Fixed an issue in the tests that caused some tests to fail if pyfits is
installed with read-only permissions. Backported from 3.1.2. (#208)
- Fixed a bug where instantiating a ``BinTableHDU`` from a numpy array
containing boolean fields converted all the values to ``False``. Backported
from 3.1.2. (#215)
- Fixed an issue where passing an array of integers into the constructor of
``Column()`` when the column type is floats of the same byte width caused the
column array to become garbled. Backported from 3.1.2. (#218)
- Fixed a couple cases where creating a new table using TDIMn in some of the
columns could caused a crash. Backported from 3.1.2.
(spacetelescope/PyFITS#3)
3.1.1 (2013-01-02)
------------------
This is a bug fix release for the 3.1.x series.
Bug Fixes
^^^^^^^^^
- Improved handling of scaled images and pseudo-unsigned integer images in
compressed image HDUs. They now work more transparently like normal image
HDUs with support for the ``do_not_scale_image_data`` and ``uint`` options,
as well as ``scale_back`` and ``save_backup``. The ``.scale()`` method
works better too. (#88)
- Permits non-string values for the EXTNAME keyword when reading in a file,
rather than throwing an exception due to the malformatting. Added
verification for the format of the EXTNAME keyword when writing. (#96)
- Added support for EXTNAME and EXTVER in PRIMARY HDUs. That is, if EXTNAME
is specified in the header, it will also be reflected in the ``.name``
attribute and in ``pyfits.info()``. These keywords used to be verboten in
PRIMARY HDUs, but the latest version of the FITS standard allows them.
(#151)
- HCOMPRESS can again be used to compress data cubes (and higher-dimensional
arrays) so long as the tile size is effectively 2-dimensional. In fact,
PyFITS will automatically use compatible tile sizes even if they're not
explicitly specified. (#171)
- Added support for the optional ``endcard`` parameter in the
``Header.fromtextfile()`` and ``Header.totextfile()`` methods. Although
``endcard=False`` was a reasonable default assumption, there are still text
dumps of FITS headers that include the END card, so this should have been
more flexible. (#176)
- Fixed a crash when running fitsdiff on two empty (that is, zero row) tables.
(#178)
- Fixed an issue where opening files containing random groups HDUs in update
mode could cause an unnecessary rewrite of the file even if none of the
data is modified. (#179)
- Fixed a bug that could caused a deadlock in the filesystem on OSX if PyFITS
is used with Numpy 1.7 in some cases. (#180)
- Fixed a crash when generating diff reports from diffs using the
``ignore_comments`` options. (#181)
- Fixed some bugs with WCS Paper IV record-valued keyword cards:
- Cards that looked kind of like RVKCs but were not intended to be were
over-permissively treated as such--commentary keywords like COMMENT and
HISTORY were particularly affected. (#183)
- Looking up a card in a header by its standard FITS keyword only should
always return the raw value of that card. That way cards containing
values that happen to valid RVKCs but were not intended to be will still
be treated like normal cards. (#184)
- Looking up a RVKC in a header with only part of the field-specifier (for
example "DP1.AXIS" instead of "DP1.AXIS.1") was implicitly treated as a
wildcard lookup. (#184)
- Fixed a crash when diffing two FITS files where at least one contains a
compressed image HDU which was not recognized as an image instead of a
table. (#187)
- Fixed bugs in the backwards compatibility layer for the ``CardList.index``
and ``CardList.count`` methods. (#190)
- Improved ``__repr__`` and text file representation of cards with long values
that are split into CONTINUE cards. (#193)
- Fixed a crash when trying to assign a long (> 72 character) value to blank
('') keywords. This also changed how blank keywords are represented--there
are still exactly 8 spaces before any commentary content can begin; this
*may* affect the exact display of header cards that assumed there could be
fewer spaces in a blank keyword card before the content begins. However, the
current approach is more in line with the requirements of the FITS standard.
(#194)
3.0.10 (2013-01-02)
-------------------
- Improved handling of scaled images and pseudo-unsigned integer images in
compressed image HDUs. They now work more transparently like normal image
HDUs with support for the ``do_not_scale_image_data`` and ``uint`` options,
as well as ``scale_back`` and ``save_backup``. The ``.scale()`` method
works better too. Backported from 3.1.1. (#88)
- Permits non-string values for the EXTNAME keyword when reading in a file,
rather than throwing an exception due to the malformatting. Added
verification for the format of the EXTNAME keyword when writing. Backported
from 3.1.1. (#96)
- Added support for EXTNAME and EXTVER in PRIMARY HDUs. That is, if EXTNAME
is specified in the header, it will also be reflected in the ``.name``
attribute and in ``pyfits.info()``. These keywords used to be verbotten in
PRIMARY HDUs, but the latest version of the FITS standard allows them.
Backported from 3.1.1. (#151)
- HCOMPRESS can again be used to compress data cubes (and higher-dimensional
arrays) so long as the tile size is effectively 2-dimensional. In fact,
PyFITS will not automatically use compatible tile sizes even if they're not
explicitly specified. Backported from 3.1.1. (#171)
- Fixed a bug when writing out files containing zero-width table columns,
where the TFIELDS keyword would be updated incorrectly, leaving the table
largely unreadable. Backported from 3.1.0. (#174)
- Fixed an issue where opening files containing random groups HDUs in update
mode could cause an unnecessary rewrite of the file even if none of the
data is modified. Backported from 3.1.1. (#179)
- Fixed a bug that could caused a deadlock in the filesystem on OSX if PyFITS
is used with Numpy 1.7 in some cases. Backported from 3.1.1. (#180)
3.1 (2012-08-08)
----------------
Highlights
^^^^^^^^^^
- The ``Header`` object has been significantly reworked, and ``CardList``
objects are now deprecated (their functionality folded into the ``Header``
class). See API Changes below for more details.
- Memory maps are now used by default to access HDU data. See API Changes
below for more details.
- Now includes a new version of the ``fitsdiff`` program for comparing two
FITS files, and a new FITS comparison API used by ``fitsdiff``. See New
Features below.
API Changes
^^^^^^^^^^^
- The ``Header`` class has been rewritten, and the ``CardList`` class is
deprecated. Most of the basic details of working with FITS headers are
unchanged, and will not be noticed by most users. But there are differences
in some areas that will be of interest to advanced users, and to application
developers. For full details of the changes, see the "Header Interface
Transition Guide" section in the PyFITS documentation. See ticket #64 on
the PyFITS Trac for futher details and background. Some highlights are
listed below:
* The Header class now fully implements the Python dict interface, and can
be used interchangably with a dict, where the keys are header keywords.
* New keywords can be added to the header using normal keyword assignment
(previously it was necessary to use ``Header.update`` to add new
keywords). For example::
>>> header['NAXIS'] = 2
will update the existing 'FOO' keyword if it already exists, or add a new
one if it doesn't exist, just like a dict.
* It is possible to assign both a value and a comment at the same time using
a tuple::
>>> header['NAXIS'] = (2, 'Number of axes')
* To add/update a new card and ensure it's added in a specific location, use
``Header.set()``::
>>> header.set('NAXIS', 2, 'Number of axes', after='BITPIX')
This works the same as the old ``Header.update()``. ``Header.update()``
still works in the old way too, but is deprecated.
* Although ``Card`` objects still exist, it generally is not necessary to
work with them directly. ``Header.ascardlist()``/``Header.ascard`` are
deprecated and should not be used. To directly access the ``Card``
objects in a header, use ``Header.cards``.
* To access card comments, it is still possible to either go through the
card itself, or through ``Header.comments``. For example::
>>> header.cards['NAXIS'].comment
Number of axes
>>> header.comments['NAXIS']
Number of axes
* ``Card`` objects can now be used interchangeably with
``(keyword, value, comment)`` 3-tuples. They still have ``.value`` and
``.comment`` attributes as well. The ``.key`` attribute has been renamed
to ``.keyword`` for consistency, though ``.key`` is still supported (but
deprecated).
- Memory mapping is now used by default to access HDU data. That is,
``pyfits.open()`` uses ``memmap=True`` as the default. This provides better
performance in the majority of use cases--there are only some I/O intensive
applications where it might not be desirable. Enabling mmap by default also
enabled finding and fixing a large number of bugs in PyFITS' handling of
memory-mapped data (most of these bug fixes were backported to PyFITS
3.0.5). (#85)
* A new ``pyfits.USE_MEMMAP`` global variable was added. Set
``pyfits.USE_MEMMAP = False`` to change the default memmap setting for
opening files. This is especially useful for controlling the behavior in
applications where pyfits is deeply embedded.
* Likewise, a new ``PYFITS_USE_MEMMAP`` environment variable is supported.
Set ``PYFITS_USE_MEMMAP = 0`` in your environment to change the default
behavior.
- The ``size()`` method on HDU objects is now a ``.size`` property--this
returns the size in bytes of the data portion of the HDU, and in most cases
is equivalent to ``hdu.data.nbytes`` (#83)
- ``BinTableHDU.tdump`` and ``BinTableHDU.tcreate`` are deprecated--use
``BinTableHDU.dump`` and ``BinTableHDU.load`` instead. The new methods
output the table data in a slightly different format from previous versions,
which places quotes around each value. This format is compatible with data
dumps from previous versions of PyFITS, but not vice-versa due to a parsing
bug in older versions.
- Likewise the ``pyfits.tdump`` and ``pyfits.tcreate`` convenience function
versions of these methods have been renamed ``pyfits.tabledump`` and
``pyfits.tableload``. The old deprecated, but currently retained for
backwards compatibility. (r1125)
- A new global variable ``pyfits.EXTENSION_NAME_CASE_SENSITIVE`` was added.
This serves as a replacement for ``pyfits.setExtensionNameCaseSensitive``
which is not deprecated and may be removed in a future version. To enable
case-sensitivity of extension names (i.e. treat 'sci' as distict from 'SCI')
set ``pyfits.EXTENSION_NAME_CASE_SENSITIVE = True``. The default is
``False``. (r1139)
- A new global configuration variable ``pyfits.STRIP_HEADER_WHITESPACE`` was
added. By default, if a string value in a header contains trailing
whitespace, that whitespace is automatically removed when the value is read.
Now if you set ``pyfits.STRIP_HEADER_WHITESPACE = False`` all whitespace is
preserved. (#146)
- The old ``classExtensions`` extension mechanism (which was deprecated in
PyFITS 3.0) is removed outright. To our knowledge it was no longer used
anywhere. (r1309)
- Warning messages from PyFITS issued through the Python warnings API are now
output to stderr instead of stdout, as is the default. PyFITS no longer
modifies the default behavior of the warnings module with respect to which
stream it outputs to. (r1319)
- The ``checksum`` argument to ``pyfits.open()`` now accepts a value of
'remove', which causes any existing CHECKSUM/DATASUM keywords to be ignored,
and removed when the file is saved.
New Features
^^^^^^^^^^^^
- Added support for the proposed "FITS" extension HDU type. See
http://listmgr.cv.nrao.edu/pipermail/fitsbits/2002-April/001094.html. FITS
HDUs contain an entire FITS file embedded in their data section. `FitsHDU`
objects work like other HDU types in PyFITS. Their ``.data`` attribute
returns the raw data array. However, they have a special ``.hdulist``
attribute which processes the data as a FITS file and returns it as an
in-memory HDUList object. FitsHDU objects also support a
``FitsHDU.fromhdulist()`` classmethod which returns a new `FitsHDU` object
that embeds the supplied HDUList. (#80)
- Added a new ``.is_image`` attribute on HDU objects, which is True if the HDU
data is an 'image' as opposed to a table or something else. Here the
meaning of 'image' is fairly loose, and mostly just means a Primary or Image
extension HDU, or possibly a compressed image HDU (#71)
- Added an ``HDUList.fromstring`` classmethod which can parse a FITS file
already in memory and instantiate and ``HDUList`` object from it. This
could be useful for integrating PyFITS with other libraries that work on
FITS file, such as CFITSIO. It may also be useful in streaming
applications. The name is a slight misnomer, in that it actually accepts
any Python object that implements the buffer interface, which includes
``bytes``, ``bytearray``, ``memoryview``, ``numpy.ndarray``, etc. (#90)
- Added a new ``pyfits.diff`` module which contains facilities for comparing
FITS files. One can use the ``pyfits.diff.FITSDiff`` class to compare two
FITS files in their entirety. There is also a ``pyfits.diff.HeaderDiff``
class for just comparing two FITS headers, and other similar interfaces.
See the PyFITS Documentation for more details on this interface. The
``pyfits.diff`` module powers the new ``fitsdiff`` program installed with
PyFITS. After installing PyFITS, run ``fitsdiff --help`` for usage details.
- ``pyfits.open()`` now accepts a ``scale_back`` argument. If set to
``True``, this automatically scales the data using the original BZERO and
BSCALE parameters the file had when it was first opened, if any, as well as
the original BITPIX. For example, if the original BITPIX were 16, this
would be equivalent to calling ``hdu.scale('int16', 'old')`` just before
calling ``flush()`` or ``close()`` on the file. This option applies to all
HDUs in the file. (#120)
- ``pyfits.open()`` now accepts a ``save_backup`` argument. If set to
``True``, this automatically saves a backup of the original file before
flushing any changes to it (this of course only applies to update and append
mode). This may be especially useful when working with scaled image data.
(#121)
Changes in Behavior
^^^^^^^^^^^^^^^^^^^
- Warnings from PyFITS are not output to stderr by default, instead of stdout
as it has been for some time. This is contrary to most users' expectations
and makes it more difficult for them to separate output from PyFITS from the
desired output for their scripts. (r1319)
Bug Fixes
^^^^^^^^^
- Fixed ``pyfits.tcreate()`` (now ``pyfits.tableload()``) to be more robust
when encountering blank lines in a column definition file (#14)
- Fixed a fairly rare crash that could occur in the handling of CONTINUE cards
when using Numpy 1.4 or lower (though 1.4 is the oldest version supported by
PyFITS). (r1330)
- Fixed ``_BaseHDU.fromstring`` to actually correctly instantiate an HDU
object from a string/buffer containing the header and data of that HDU.
This allowed for the implementation of ``HDUList.fromstring`` described
above. (#90)
- Fixed a rare corner case where, in some use cases, (mildly, recoverably)
malformatted float values in headers were not properly returned as floats.
(#137)
- Fixed a corollary to the previous bug where float values with a leading zero
before the decimal point had the leading zero unnecessarily removed when
saving changes to the file (eg. "0.001" would be written back as ".001" even
if no changes were otherwise made to the file). (#137)
- When opening a file containing CHECKSUM and/or DATASUM keywords in update
mode, the CHECKSUM/DATASUM are updated and preserved even if the file was
opened with checksum=False. This change in behavior prevents checksums from
being unintentionally removed. (#148)
- Fixed a bug where ``ImageHDU.scale(option='old')`` wasn't working at all--it
was not restoring the image to its original BSCALE and BZERO values. (#162)
- Fixed a bug when writing out files containing zero-width table columns,
where the TFIELDS keyword would be updated incorrectly, leaving the table
largely unreadable. This fix will be backported to the 3.0.x series in
version 3.0.10. (#174)
3.0.9 (2012-08-06)
------------------
This is a bug fix release for the 3.0.x series.
Bug Fixes
^^^^^^^^^
- Fixed ``Header.values()``/``Header.itervalues()`` and ``Header.items()``/
``Header.iteritems()`` to correctly return the different values for
duplicate keywords (particularly commentary keywords like HISTORY and
COMMENT). This makes the old Header implementation slightly more compatible
with the new implementation in PyFITS 3.1. (#127)
.. note::
This fix did not change the existing behavior from earlier PyFITS
versions where ``Header.keys()`` returns all keywords in the header with
duplicates removed. PyFITS 3.1 changes that behavior, so that
``Header.keys()`` includes duplicates.
- Fixed a bug where ``ImageHDU.scale(option='old')`` wasn't working at all--it
was not restoring the image to its original BSCALE and BZERO values. (#162)
- Fixed a bug where opening a file containing compressed image HDUs in
'update' mode and then immediately closing it without making any changes
caused the file to be rewritten unncessarily. (#167)
- Fixed two memory leaks that could occur when writing compressed image data,
or in some cases when opening files containing compressed image HDUs in
'update' mode. (#168)
3.0.8 (2012-06-04)
------------------
Changes in Behavior
^^^^^^^^^^^^^^^^^^^
- Prior to this release, image data sections did not work with scaled
data--that is, images with non-trivial BSCALE and/or BZERO values.
Previously, in order to read such images in sections, it was necessary to
manually apply the BSCALE+BZERO to each section. It's worth noting that
sections *did* support pseudo-unsigned ints (flakily). This change just
extends that support for general BSCALE+BZERO values.
Bug Fixes
^^^^^^^^^
- Fixed a bug that prevented updates to values in boolean table columns from
being saved. This turned out to be a symptom of a deeper problem that could
prevent other table updates from being saved as well. (#139)
- Fixed a corner case in which a keyword comment ending with the string "END"
could, in some circumstances, cause headers (and the rest of the file after
that point) to be misread. (#142)
- Fixed support for scaled image data and psuedo-unsigned ints in image data
sections (``hdu.section``). Previously this was not supported at all. At
some point support was supposedly added, but it was buggy and incomplete.
Now the feature seems to work much better. (#143)
- Fixed the documentation to point out that image data sections *do* support
non-contiguous slices (and have for a long time). The documentation was
never updated to reflect this, and misinformed users that only contiguous
slices were supported, leading to some confusion. (#144)
- Fixed a bug where creating an ``HDUList`` object containing multiple PRIMARY
HDUs caused an infinite recursion when validating the object prior to
writing to a file. (#145)
- Fixed a rare but serious case where saving an update to a file that
previously had a CHECKSUM and/or DATASUM keyword, but removed the checksum
in saving, could cause the file to be slightly corrupted and unreadable.
(#147)
- Fixed problems with reading "non-standard" FITS files with primary headers
containing SIMPLE = F. PyFITS has never made many guarantees as to how such
files are handled. But it should at least be possible to read their
headers, and the data if possible. Saving changes to such a file should not
try to prepend an unwanted valid PRIMARY HDU. (#157)
- Fixed a bug where opening an image with ``disable_image_compression = True``
caused compression to be disabled for all subsequent ``pyfits.open()`` calls.
(r1651)
3.0.7 (2012-04-10)
------------------
Changes in Behavior
^^^^^^^^^^^^^^^^^^^
- Slices of GroupData objects now return new GroupData objects instead of
extended multi-row _Group objects. This is analogous to how PyFITS 3.0 fixed
FITS_rec slicing, and should have been fixed for GroupData at the same time.
The old behavior caused bugs where functions internal to Numpy expected that
slicing an ndarray would return a new ndarray. As this is a rare usecase
with a rare feature most users are unlikely to be affected by this change.
- The previously internal _Group object for representing individual group
records in a GroupData object are renamed Group and are now a public
interface. However, there's almost no good reason to create Group objects
directly, so it shouldn't be considered a "new feature".
- An annoyance from PyFITS 3.0.6 was fixed, where the value of the EXTEND
keyword was always being set to F if there are not actually any extension
HDUs. It was unnecessary to modify this value.
Bug Fixes
^^^^^^^^^
- Fixed GroupData objects to return new GroupData objects when sliced instead
of _Group record objects. See "Changes in behavior" above for more details.
- Fixed slicing of Group objects--previously it was not possible to slice
slice them at all.
- Made it possible to assign `np.bool_` objects as header values. (#123)
- Fixed overly strict handling of the EXTEND keyword; see "Changes in
behavior" above. (#124)
- Fixed many cases where an HDU's header would be marked as "modified" by
PyFITS and rewritten, even when no changes to the header are necessary.
(#125)
- Fixed a bug where the values of the PTYPEn keywords in a random groups HDU
were forced to be all lower-case when saving the file. (#130)
- Removed an unnecessary inline import in `ExtensionHDU.__setattr__` that was
causing some slowdown when opening files containing a large number of
extensions, plus a few other small (but not insignficant) performance
improvements thanks to Julian Taylor. (#133)
- Fixed a regression where header blocks containing invalid end-of-header
padding (i.e. null bytes instead of spaces) couldn't be parsed by PyFITS.
Such headers can be parsed again, but a warning is raised, as such headers
are not valid FITS. (#136)
- Fixed a memory leak where table data in random groups HDUs weren't being
garbage collected. (#138)
3.0.6 (2012-02-29)
------------------
Highlights
^^^^^^^^^^
The main reason for this release is to fix an issue that was introduced in
PyFITS 3.0.5 where merely opening a file containing scaled data (that is, with
non-trivial BSCALE and BZERO keywords) in 'update' mode would cause the data
to be automatically rescaled--possibly converting the data from ints to
floats--as soon as the file is closed, even if the application did not touch
the data. Now PyFITS will only rescale the data in an extension when the data
is actually accessed by the application. So opening a file in 'update' mode
in order to modify the header or append new extensions will not cause any
change to the data in existing extensions.
This release also fixes a few Windows-specific bugs found through more
extensive Windows testing, and other miscellaneous bugs.
Bug Fixes
^^^^^^^^^
- More accurate error messages when opening files containing invalid header
cards. (#109)
- Fixed a possible reference cycle/memory leak that was caught through more
extensive testing on Windows. (#112)
- Fixed 'ostream' mode to open the underlying file in 'wb' mode instead of 'w'
mode. (#112)
- Fixed a Windows-only issue where trying to save updates to a resized FITS
file could result in a crash due to there being open mmaps on that file.
(#112)
- Fixed a crash when trying to create a FITS table (i.e. with new_table())
from a Numpy array containing bool fields. (#113)
- Fixed a bug where manually initializing an ``HDUList`` with a list of of
HDUs wouldn't set the correct EXTEND keyword value on the primary HDU.
(#114)
- Fixed a crash that could occur when trying to deepcopy a Header in Python <
2.7. (#115)
- Fixed an issue where merely opening a scaled image in 'update' mode would
cause the data to be converted to floats when the file is closed. (#119)
3.0.5 (2012-01-30)
------------------
- Fixed a crash that could occur when accessing image sections of files
opened with memmap=True. (r1211)
- Fixed the inconsistency in the behavior of files opened in 'readonly' mode
when memmap=True vs. when memmap=False. In the latter case, although
changes to array data were not saved to disk, it was possible to update the
array data in memory. On the other hand with memmap=True, 'readonly' mode
prevented even in-memory modification to the data. This is what
'copyonwrite' mode was for, but difference in behavior was confusing. Now
'readonly' is equivalent to 'copyonwrite' when using memmap. If the old
behavior of denying changes to the array data is necessary, a new
'denywrite' mode may be used, though it is only applicable to files opened
with memmap. (r1275)
- Fixed an issue where files opened with memmap=True would return image data
as a raw numpy.memmap object, which can cause some unexpected
behaviors--instead memmap object is viewed as a numpy.ndarray. (r1285)
- Fixed an issue in Python 3 where a workaround for a bug in Numpy on Python 3
interacted badly with some other software, namely to vo.table package (and
possibly others). (r1320, r1337, and #110)
- Fixed buggy behavior in the handling of SIGINTs (i.e. Ctrl-C keyboard
interrupts) while flushing changes to a FITS file. PyFITS already prevented
SIGINTs from causing an incomplete flush, but did not clean up the signal
handlers properly afterwards, or reraise the keyboard interrupt once the
flush was complete. (r1321)
- Fixed a crash that could occur in Python 3 when opening files with checksum
checking enabled. (r1336)
- Fixed a small bug that could cause a crash in the `StreamingHDU` interface
when using Numpy below version 1.5.
- Fixed a crash that could occur when creating a new `CompImageHDU` from an
array of big-endian data. (#104)
- Fixed a crash when opening a file with extra zero padding at the end.
Though FITS files should not have such padding, it's not explictly forbidden
by the format either, and PyFITS shouldn't stumble over it. (#106)
- Fixed a major slowdown in opening tables containing large columns of string
values. (#111)
3.0.4 (2011-11-22)
------------------
- Fixed a crash when writing HCOMPRESS compressed images that could happen on
Python 2.5 and 2.6. (r1217)
- Fixed a crash when slicing an table in a file opened in 'readonly' mode with
memmap=True. (r1230)
- Writing changes to a file or writing to a new file verifies the output in
'fix' mode by default instead of 'exception'--that is, PyFITS will
automatically fix common FITS format errors rather than raising an
exception. (r1243)
- Fixed a bug where convenience functions such as getval() and getheader()
crashed when specifying just 'PRIMARY' as the extension to use (r1263).
- Fixed a bug that prevented passing keyword arguments (beyond the standard
data and header arguments) as positional arguments to the constructors of
extension HDU classes.
- Fixed some tests that were failing on Windows--in this case the tests
themselves failed to close some temp files and Windows refused to delete them
while there were still open handles on them. (r1295)
- Fixed an issue with floating point formatting in header values on Python 2.5
for Windows (and possibly other platforms). The exponent was zero-padded to
3 digits; although the FITS standard makes no specification on this, the
formatting is now normalized to always pad the exponent to two digits.
(r1295)
- Fixed a bug where long commentary cards (such as HISTORY and COMMENT) were
broken into multiple CONTINUE cards. However, commentary cards are not
expected to be found in CONTINUE cards. Instead these long cards are broken
into multiple commentary cards. (#97)
- GZIP/ZIP-compressed FITS files can be detected and opened regardless of
their filename extension. (#99)
- Fixed a serious bug where opening scaled images in 'update' mode and then
closing the file without touching the data would cause the file to be
corrupted. (#101)
3.0.3 (2011-10-05)
------------------
- Fixed several small bugs involving corner cases in record-valued keyword
cards (#70)
- In some cases HDU creation failed if the first keyword value in the header
was not a string value (#89)
- Fixed a crash when trying to compute the HDU checksum when the data array
contains an odd number of bytes (#91)
- Disabled an unnecessary warning that was displayed on opening compressed
HDUs with disable_image_compression = True (#92)
- Fixed a typo in code for handling HCOMPRESS compressed images.
3.0.2 (2011-09-23)
------------------
- The ``BinTableHDU.tcreate`` method and by extension the ``pyfits.tcreate``
function don't get tripped up by blank lines anymore (#14)
- The presence, value, and position of the EXTEND keyword in Primary HDUs is
verified when reading/writing a FITS file (#32)
- Improved documentation (in warning messages as well as in the handbook) that
PyFITS uses zero-based indexing (as one would expect for C/Python code, but
contrary to the PyFITS standard which was written with FORTRAN in mind)
(#68)
- Fixed a bug where updating a header card comment could cause the value to be
lost if it had not already been read from the card image string.
- Fixed a related bug where changes made directly to Card object in a header
(i.e. assigning directly to card.value or card.comment) would not propagate
when flushing changes to the file (#69) [Note: This and the bug above it
were originally reported as being fixed in version 3.0.1, but the fix was
never included in the release.]
- Improved file handling, particularly in Python 3 which had a few small file
I/O-related bugs (#76)
- Fixed a bug where updating a FITS file would sometimes cause it to lose its
original file permissions (#79)
- Fixed the handling of TDIMn keywords; 3.0 added support for them, but got
the axis order backards (they were treated as though they were row-major)
(#82)
- Fixed a crash when a FITS file containing scaled data is opened and
immediately written to a new file without explicitly viewing the data first
(#84)
- Fixed a bug where creating a table with columns named either 'names' or
'formats' resulted in an infinite recursion (#86)
3.0.1 (2011-09-12)
------------------
- Fixed a bug where updating a header card comment could cause the value to be
lost if it had not already been read from the card image string.
- Changed ``_TableBaseHDU.data`` so that if the data contain an empty table a
``FITS_rec`` object with zero rows is returned rather than ``None``.
- The ``.key`` attribute of ``RecordValuedKeywordCards`` now returns the full
keyword+field-specifier value, instead of just the plain keyword (#46)
- Fixed a related bug where changes made directly to Card object in a header
(i.e. assigning directly to card.value or card.comment) would not propagate
when flushing changes to the file (#69)
- Fixed a bug where writing a table with zero rows could fail in some cases
(#72)
- Miscellanous small bug fixes that were causing some tests to fail,
particularly on Python 3 (#74, #75)
- Fixed a bug where creating a table column from an array in non-native byte
order would not preserve the byte order, thus interpreting the column array
using the wrong byte order (#77)
3.0.0 (2011-08-23)
--------------------
- Contains major changes, bumping the version to 3.0
- Large amounts of refactoring and reorganization of the code; tried to
preserve public API backwards-compatibility with older versions (private API
has many changes and is not guaranteed to be backwards-compatible). There
are a few small public API changes to be aware of:
* The pyfits.rec module has been removed completely. If your version of
numpy does not have the numpy.core.records module it is too old to be used
with PyFITS.
* The ``Header.ascardlist()`` method is deprecated--use the ``.ascard``
attribute instead.
* ``Card`` instances have a new ``.cardimage`` attribute that should be used
rather than ``.ascardimage()``, which may become deprecated.
* The ``Card.fromstring()`` method is now a classmethod. It returns a new
``Card`` instance rather than modifying an existing instance.
* The ``req_cards()`` method on HDU instances has changed: The ``pos``
argument is not longer a string. It is either an integer value (meaning
the card's position must match that value) or it can be a function that
takes the card's position as it's argument, and returns True if the
position is valid. Likewise, the ``test`` argument no longer takes a
string, but instead a function that validates the card's value and returns
True or False.
* The ``get_coldefs()`` method of table HDUs is deprecated. Use the
``.columns`` attribute instead.
* The ``ColDefs.data`` attribute is deprecated--use ``ColDefs.columns``
instead (though in general you shouldn't mess with it directly--it might
become internal at some point).
* ``FITS_record`` objects take ``start`` and ``end`` as arguments instead of
``startColumn`` and ``endColumn`` (these are rarely created manually, so
it's unlikely that this change will affect anyone).
* ``BinTableHDU.tcreate()`` is now a classmethod, and returns a new
``BinTableHDU`` instance.
* Use ``ExtensionHDU`` and ``NonstandardExtHDU`` for making new extension HDU
classes. They are now public interfaces, wheres previously they were
private and prefixed with underscores.
* Possibly others--please report if you find any changes that cause
difficulties.
- Calls to deprecated functions will display a Deprecation warning. However,
in Python 2.7 and up Deprecation warnings are ignored by default, so run
Python with the `-Wd` option to see if you're using any deprecated
functions. If we get close to actually removing any functions, we might
make the Deprecation warnings display by default.
- Added basic Python 3 support
- Added support for multi-dimensional columns in tables as specified by the
TDIMn keywords (#47)
- Fixed a major memory leak that occurred when creating new tables with the
``new_table()`` function (#49)
be padded with zero-bytes) vs ASCII tables (where strings are padded with
spaces) (#15)
- Fixed a bug in which the case of Random Access Group parameters names was not
preserved when writing (#41)
- Added support for binary table fields with zero width (#42)
- Added support for wider integer types in ASCII tables; although this is non-
standard, some GEIS images require it (#45)
- Fixed a bug that caused the index_of() method of HDULists to crash when the
HDUList object is created from scratch (#48)
- Fixed the behavior of string padding in binary tables (where strings should
be padded with nulls instead of spaces)
- Fixed a rare issue that caused excessive memory usage when computing
checksums using a non-standard block size (see r818)
- Add support for forced uint data in image sections (#53)
- Fixed an issue where variable-length array columns were not extended when
creating a new table with more rows than the original (#54)
- Fixed tuple and list-based indexing of FITS_rec objects (#55)
- Fixed an issue where BZERO and BSCALE keywords were appended to headers in
the wrong location (#56)
- ``FITS_record`` objects (table rows) have full slicing support, including
stepping, etc. (#59)
- Fixed a bug where updating multiple files simultaneously (such as when
running parallel processes) could lead to a race condition with mktemp()
(#61)
- Fixed a bug where compressed image headers were not in the order expected by
the funpack utility (#62)
jperkin
pushed a commit
that referenced
this pull request
Mar 14, 2014
What's new in psycopg 2.4.6
---------------------------
- Fixed 'cursor()' arguments propagation in connection subclasses
and overriding of the 'cursor_factory' argument. Thanks to
Corry Haines for the report and the initial patch (ticket #105).
- Dropped GIL release during string adaptation around a function call
invoking a Python API function, which could cause interpreter crash.
Thanks to Manu Cupcic for the report (ticket #110).
- Close a green connection if there is an error in the callback.
Maybe a harsh solution but it leaves the program responsive
(ticket #113).
- 'register_hstore()', 'register_composite()', 'tpc_recover()' work with
RealDictConnection and Cursor (ticket #114).
- Fixed broken pool for Zope and connections re-init across ZSQL methods
in the same request (tickets #123, #125, #142).
- connect() raises an exception instead of swallowing keyword arguments
when a connection string is specified as well (ticket #131).
- Discard any result produced by 'executemany()' (ticket #133).
- Fixed pickling of FixedOffsetTimezone objects (ticket #135).
- Release the GIL around PQgetResult calls after COPY (ticket #140).
- Fixed empty strings handling in composite caster (ticket #141).
- Fixed pickling of DictRow and RealDictRow objects.
jperkin
pushed a commit
that referenced
this pull request
Mar 14, 2014
============= - Tig now has its own tag on Stack Overflow, where users are invited to ask questions: http://stackoverflow.com/questions/tagged/tig Improvements: - Make tig prompt commands bindable to keys. For example: `bind diff F :set diff-options = --full-diff`. (GH #69, #116) - Add a diff-options setting for specifying default diff options. Example: `set diff-options = --patience`. (GH #116) - Options in diff-options and blame-options matching tig browsing state variables are replaced. - Show diff stats as wide as the terminal. (GH #109) - Show line numbers in the branch view. (GH #135) - Add toggles for showing author email or email user names. (GH #115) - Open editor at the selected line by prefixing the file argument with `+<lineno>`. Tested in vi, vim, emacs, nano, gedit, geany. Disable by adding `set editor-line-number = no` to ~/.tigrc. (GH #118, #119) - Add toggle-files to control whether to show full commit diff or only the diff concerning the currently selected file, e.g. for blame. - Optionally highlight exceeding characters in long commit titles. The default title max width is 50 characters. Customize using: `set title-overflow = 50` (GH #125) - Add +ESC key bindings. Example: `bind generic ^[v move-page-up` (GH #120) - Create temporary files in TMPDIR, TEMP, or TMP before defaulting to /tmp. - Reenable `tig log` as a subcommand. (GH #146) - Enable tilde expansion in ~/.tigrc "source" commands. (GH #168) - Introduce the stash view, bound to the 'y' keybinding. (GH #169, #174) Bug fixes: - Fix blame and status to work in directories starting with a dot. (GH #172) - Reload current branch name when reloading the status view. (GH #93) - Fix compile errors on old Solaris. (GH #97) - Reload HEAD info when reloading the stage view. (GH #104, #93) - Fix disappearing branch labels after external commands. (GH #148) - Fix diff view display for staged/unstaged changes when using 'd'. - Fix display of status messages when toggling view options. (GH #111) - Fix illegal memory access. (GH #98) - Fix display of all branches label in repos with short branch names. - Fix rendering glitch for branch names. - Do not apply diff styling to untracked files in the stage view. (GH #153) - Fix tree indentation for entries containing combining characters. (GH #170) - Ignore unrepresentable characters when transliterating text for rendering. - Transliterate text to output encoding before trimming it to avoid misalignment. (GH #86) - Introduce a more natural context-sensitive log display. (GH #155)
jperkin
pushed a commit
that referenced
this pull request
Mar 14, 2014
Release 3.1.1 - 2013/12/29 -------------------------- Improvements ^^^^^^^^^^^^ * [deb] Refined Groonga packages for Debian policy. [groonga-dev,01930] [Suggested by Hideki Yamane] * [deb] Dropped Debian 6.0 (squeeze) support. * [deb] Dropped Ubuntu 10.04 (lucid) support. * Supported :doc:`/reference/functions/geo_in_rectangle` in the whole world. * Supported error report when failed to casting invalid value of geo point type. * Exported some macros which is used for accessing pseudo column names. [groonga-dev,1999] [Suggested by whombx] * [doc] Refined drilldown documentation. [Reported by @Yahppo] * Supported :doc:`/reference/functions/between` function which is used for filtering the column value in specific range. * [doc] Updated Travis CI envrinment information. [Patch by cosmo0920] * [rpm][fedora] Dropped Fedora 19. * [rpm][fedora] Supported Fedora 20. * [doc] Updated "Groonga" notation. [Patch by cosmo0920] [GitHub#122, #123, #124, #125, #125, #126, #127, #128, #129, #130, #131, #131, #132, #133, #134] Fixes ^^^^^ * [munin] Fixed the wrong port number which is specified for GQTP. * [geo_in_circle] Fixed a bug that if you specify "LONGITUDExLATITUDE" as the 3rd argument of :doc:`/reference/functions/geo_in_circle`, Groonga crashes. Thanks ^^^^^^ * Hideki Yamane * whombx * @yappo * cosmo0920
jperkin
pushed a commit
that referenced
this pull request
Mar 14, 2014
FITS (Flexible Image Transport System) is a data format most used in astronomy.
PyFITS is a Python module for reading, writing, and manipulating FITS files.
The module uses Python's object-oriented features to provide quick, easy, and
efficient access to FITS files. The use of Python's array syntax enables
immediate access to any FITS extension, header cards, or data items.
Changes to 2.4.0 (in py-pyfits):
Changelog
===========
3.2 (2013-11-26)
----------------
Highlights
^^^^^^^^^^
- Rewrote CFITSIO-based backend for handling tile compression of FITS files.
It now uses a standard CFITSIO instead of heavily modified pieces of CFITSIO
as before. PyFITS ships with its own copy of CFITSIO v3.35 which supports
the latest version of the Tiled Image Convention (v2.3), but system
packagers may choose instead to strip this out in favor of a
system-installed version of CFITSIO. Earlier versions may work, but nothing
earlier than 3.28 has been tested yet. (#169)
- Added support for reading and writing tables using the Q format for columns.
The Q format is identical to the P format (variable-length arrays) except
that it uses 64-bit integers for the data descriptors, allowing more than
4 GB of variable-length array data in a single table. (#160)
- Added initial support for table columns containing pseudo-unsigned integers.
This is currently enabled by using the ``uint=True`` option when opening
files; any table columns with the correct BZERO value will be interpreted
and returned as arrays of unsigned integers.
- Some refactoring of the table and ``FITS_rec`` modules in order to better
separate the details of the FITS binary and ASCII table data structures from
the HDU data structures that encapsulate them. Most of these changes should
not be apparent to users (but see API Changes below).
API Changes
^^^^^^^^^^^
- Assigning to values in ``ColDefs.names``, ``ColDefs.formats``,
``ColDefs.nulls`` and other attributes of ``ColDefs`` instances that return
lists of column properties is no longer supported. Assigning to those lists
will no longer update the corresponding columns. Instead, please just
modify the ``Column`` instances directly (``Column.name``, ``Column.null``,
etc.)
- The ``pyfits.new_table`` function is marked "pending deprecation". This
does not mean it will be removed outright or that its functionality has
changed. It will likely be replaced in the future for a function with
similar, if not subtly different functionality. A better, if not slightly
more verbose approach is to use ``pyfits.FITS_rec.from_columns`` to create
a new ``FITS_rec`` table--this has the same interface as
``pyfits.new_table``. The difference is that it returns a plan ``FITS_rec``
array, and not an HDU instance. This ``FITS_rec`` object can then be used
as the data argument in the constructors for ``BinTableHDU`` (for binary
tables) or ``TableHDU`` (for ASCII tables). This is analogous to creating
an ``ImageHDU`` by passing in an image array.
``pyfits.FITS_rec.from_columns`` is just a simpler way of creating a
FITS-compatible recarray from a FITS column specification.
- The ``updateHeader``, ``updateHeaderData``, and ``updateCompressedData``
methods of the ``CompDataHDU`` class are pending deprecation and moved to
internal methods. The operation of these methods depended too much on
internal state to be used safely by users; instead they are invoked
automatically in the appropriate places when reading/writing compressed image
HDUs.
- The ``CompDataHDU.compData`` attribute is pending deprecation in favor of
the clearer and more PEP-8 compatible ``CompDataHDU.compressed_data``.
- The constructor for ``CompDataHDU`` has been changed to accept new keyword
arguments. The new keyword arguments are essentially the same, but are in
underscore_separated format rather than camelCase format. The old arguments
are still pending deprecation.
- The internal attributes of HDU classes ``_hdrLoc``, ``_datLoc``, and
``_datSpan`` have been replaced with ``_header_offset``, ``_data_offset``,
and ``_data_size`` respectively. The old attribute names are still pending
deprecation. This should only be of interest to advanced users who have
created their own HDU subclasses.
- The following previously deprecated functions and methods have been removed
entirely: ``createCard``, ``createCardFromString``, ``upperKey``,
``ColDefs.data``, ``setExtensionNameCaseSensitive``, ``_File.getfile``,
``_TableBaseHDU.get_coldefs``, ``Header.has_key``, ``Header.ascardlist``.
If you run your code with a previous version of PyFITS (>= 3.0, < 3.2) with
the ``python -Wd`` argument, warnings for all deprecated interfaces still in
use will be displayed.
- Interfaces that were pending deprecation are now fully deprecated. These
include: ``create_card``, ``create_card_from_string``, ``upper_key``,
``Header.get_history``, and ``Header.get_comment``.
- The ``.name`` attribute on HDUs is now directly tied to the HDU's header, so
that if ``.header['EXTNAME']`` changes so does ``.name`` and vice-versa.
- The ``pyfits.file.PYTHON_MODES`` constant dict was renamed to
``pyfits.file.PYFITS_MODES`` which better reflects its purpose. This is
rarely used by client code, however. Support for the old name will be
removed by PyFITS 3.4.
Other Changes and Additions
^^^^^^^^^^^^^^^^^^^^^^^^^^^
- The new compression code also adds support for the ZQUANTIZ and ZDITHER0
keywords added in more recent versions of this FITS Tile Compression spec.
This includes support for lossless compression with GZIP. (#198) By default
no dithering is used, but the ``SUBTRACTIVE_DITHER_1`` and
``SUBTRACTIVE_DITHER_2`` methods can be enabled by passing the correct
constants to the ``quantize_method`` argument to the ``CompImageHDU``
constuctor. A seed can be manually specified, or automatically generated
using either the system clock or checksum-based methods via the
``dither_seed`` argument. See the documentation for ``CompImageHDU`` for
more details. (#198) (spacetelescope/PYFITS#32)
- Images compressed with the Tile Compression standard can now be larger than
4 GB through support of the Q format. (#159)
- All HDUs now have a ``.ver`` ``.level`` attribute that returns the value of
the EXTVAL and EXTLEVEL keywords from that HDU's header, if the exist. This
was added for consistency with the ``.name`` attribute which returns the
EXTNAME value from the header.
- Then ``Column`` and ``ColDefs`` classes have new ``.dtype`` attributes
which give the Numpy dtype for the column data in the first case, and the
full Numpy compound dtype for each table row in the latter case.
- There was an issue where new tables created defaulted the values in all
string columns to '0.0'. Now string columns are filled with empty strings
by default--this seems a less surprising default, but it may cause
differences with tables created with older versions of PyFITS.
- Improved round-tripping and preservation of manually assigned column
attributes (``TNULLn``, ``TSCALn``, etc.) in table HDU headers.
(astropy/astropy#996)
Bug Fixes
^^^^^^^^^
- Binary tables containing compressed images may, optionally, contain other
columns unrelated to the tile compression convention. Although this is an
uncommon use case, it is permitted by the standard. (#159)
- Reworked some of the file I/O routines to allow simpler, more consistent
mapping between OS-level file modes ('rb', 'wb', 'ab', etc.) and the more
"PyFITS-specific" modes used by PyFITS like "readonly" and "update".
That is, if reading a FITS file from an open file object, it doesn't matter
as much what "mode" it was opened in so long as it has the right
capabilities (read/write/etc.) Also works around bugs in the Python io
module in 2.6+ with regard to file modes. (spacetelescope/PyFITS#33)
- Fixed an obscure issue that can occur on systems that don't have flush to
memory-mapped files implemented (namely GNU Hurd). (astropy/astropy#968)
3.1.3 (2013-11-26)
------------------
- Disallowed assigning NaN and Inf floating point values as header values,
since the FITS standard does not define a way to represent them in. Because
this is undefined, the previous behavior did not make sense and produced
invalid FITS files. (spacetelescope/PyFITS#11)
- Added a workaround for a bug in 64-bit OSX that could cause truncation when
writing files greater than 2^32 bytes in size. (spacetelescope/PyFITS#28)
- Fixed a long-standing issue where writing binary tables did not correctly
write the TFORMn keywords for variable-length array columns (they ommitted
the max array length parameter of the format). This was thought fixed in
v3.1.2, but it was only fixed there for compressed image HDUs and not for
binary tables in general.
- Fixed an obscure issue that can occur on systems that don't have flush to
memory-mapped files implemented (namely GNU Hurd). (Backported from 3.2)
3.0.12 (2013-11-26)
-------------------
- Disallowed assigning NaN and Inf floating point values as header values,
since the FITS standard does not define a way to represent them in. Because
this is undefined, the previous behavior did not make sense and produced
invalid FITS files. (Backported from 3.1.3)
- Added a workaround for a bug in 64-bit OSX that could cause truncation when
writing files greater than 2^32 bytes in size. (Backported from 3.1.3)
- Fixed a long-standing issue where writing binary tables did not correctly
write the TFORMn keywords for variable-length array columns (they ommitted
the max array length parameter of the format). This was thought fixed in
v3.1.2, but it was only fixed there for compressed image HDUs and not for
binary tables in general. (Backported from 3.1.3)
- Fixed an obscure issue that can occur on systems that don't have flush to
memory-mapped files implemented (namely GNU Hurd). (Backported from 3.2)
3.1.2 (2013-04-22)
------------------
- When an error occurs opening a file in fitsdiff the exception message will
now at least mention which file had the error. (#168)
- Fixed support for opening gzipped FITS files by filename in a writeable mode
(PyFITS has supported writing to gzip files for some time now, but only
enabled it when GzipFile objects were passed to ``pyfits.open()`` due to
some legacy code preventing full gzip support. (#195)
- Added a more helpful error message in the case of malformatted FITS files
that contain non-float NULL values in an ASCII table but are missing the
required TNULLn keywords in the header. (#197)
- Fixed an (apparently long-standing) issue where writing compressed images
did not correctly write the TFORMn keywords for variable-length array
columns (they ommitted the max array length parameter of the format). (#199)
- Slightly refactored how tables containing variable-length array columns are
handled to add two improvements: Fixes an issue where accessing the data
after a call to the `pyfits.getdata` convenience function caused an
exception, and allows the VLA data to be read from an existing mmap of the
FITS file. (#200)
- Fixed a bug that could occur when opening a table containing
multi-dimensional columns (i.e. via the TDIMn keyword) and then writing it
out to a new file. (#201)
- Added use of the console_scripts entry point to install the fitsdiff and
fitscheck scripts, which if nothing else provides better Windows support.
The generated scripts now override the ones explicitly defined in the
scripts/ directory (which were just trivial stubs to begin with). (#202)
- Fixed a bug on Python 3 where attempting to open a non-existent file on
Python 3 caused a seemingly unrelated traceback. (#203)
- Fixed a bug in fitsdiff that reported two header keywords containing NaN
as value as different. (#204)
- Fixed an issue in the tests that caused some tests to fail if pyfits is
installed with read-only permissions. (#208)
- Fixed a bug where instantiating a ``BinTableHDU`` from a numpy array
containing boolean fields converted all the values to ``False``. (#215)
- Fixed an issue where passing an array of integers into the constructor of
``Column()`` when the column type is floats of the same byte width caused the
column array to become garbled. (#218)
- Fixed inconsistent behavior in creating CONTINUE cards from byte strings
versus unicode strings in Python 2--CONTINUE cards can now be created
properly from unicode strings (so long as they are convertable to ASCII).
(spacetelescope/PyFITS#1)
- Fixed a couple cases where creating a new table using TDIMn in some of the
columns could caused a crash. (spacetelescope/PyFITS#3)
- Fixed a bug in parsing HIERARCH keywords that do not have a space after
the first equals sign (before the value). (spacetelescope/PyFITS#5)
- Prevented extra leading whitespace on HIERARCH keywords from being treated
as part of the keyword. (spacetelescope/PyFITS#6)
- Fixed a bug where HIERARCH keywords containing lower-case letters was
mistakenly marked as invalid during header validation.
(spacetelescope/PyFITS#7)
- Fixed an issue that was ancillary to (spacetelescope/PyFITS#7) where the
``Header.index()`` method did not work correctly with HIERARCH keywords
containing lower-case letters.
3.0.11 (2013-04-17)
-------------------
- Fixed support for opening gzipped FITS files by filename in a writeable mode
(PyFITS has supported writing to gzip files for some time now, but only
enabled it when GzipFile objects were passed to ``pyfits.open()`` due to
some legacy code preventing full gzip support. Backported from 3.1.2. (#195)
- Added a more helpful error message in the case of malformatted FITS files
that contain non-float NULL values in an ASCII table but are missing the
required TNULLn keywords in the header. Backported from 3.1.2. (#197)
- Fixed an (apparently long-standing) issue where writing compressed images did
not correctly write the TFORMn keywords for variable-length array columns
(they ommitted the max array length parameter of the format). Backported from
3.1.2. (#199)
- Slightly refactored how tables containing variable-length array columns are
handled to add two improvements: Fixes an issue where accessing the data
after a call to the `pyfits.getdata` convenience function caused an
exception, and allows the VLA data to be read from an existing mmap of the
FITS file. Backported from 3.1.2. (#200)
- Fixed a bug that could occur when opening a table containing
multi-dimensional columns (i.e. via the TDIMn keyword) and then writing it
out to a new file. Backported from 3.1.2. (#201)
- Fixed a bug on Python 3 where attempting to open a non-existent file on
Python 3 caused a seemingly unrelated traceback. Backported from 3.1.2.
(#203)
- Fixed a bug in fitsdiff that reported two header keywords containing NaN
as value as different. Backported from 3.1.2. (#204)
- Fixed an issue in the tests that caused some tests to fail if pyfits is
installed with read-only permissions. Backported from 3.1.2. (#208)
- Fixed a bug where instantiating a ``BinTableHDU`` from a numpy array
containing boolean fields converted all the values to ``False``. Backported
from 3.1.2. (#215)
- Fixed an issue where passing an array of integers into the constructor of
``Column()`` when the column type is floats of the same byte width caused the
column array to become garbled. Backported from 3.1.2. (#218)
- Fixed a couple cases where creating a new table using TDIMn in some of the
columns could caused a crash. Backported from 3.1.2.
(spacetelescope/PyFITS#3)
3.1.1 (2013-01-02)
------------------
This is a bug fix release for the 3.1.x series.
Bug Fixes
^^^^^^^^^
- Improved handling of scaled images and pseudo-unsigned integer images in
compressed image HDUs. They now work more transparently like normal image
HDUs with support for the ``do_not_scale_image_data`` and ``uint`` options,
as well as ``scale_back`` and ``save_backup``. The ``.scale()`` method
works better too. (#88)
- Permits non-string values for the EXTNAME keyword when reading in a file,
rather than throwing an exception due to the malformatting. Added
verification for the format of the EXTNAME keyword when writing. (#96)
- Added support for EXTNAME and EXTVER in PRIMARY HDUs. That is, if EXTNAME
is specified in the header, it will also be reflected in the ``.name``
attribute and in ``pyfits.info()``. These keywords used to be verboten in
PRIMARY HDUs, but the latest version of the FITS standard allows them.
(#151)
- HCOMPRESS can again be used to compress data cubes (and higher-dimensional
arrays) so long as the tile size is effectively 2-dimensional. In fact,
PyFITS will automatically use compatible tile sizes even if they're not
explicitly specified. (#171)
- Added support for the optional ``endcard`` parameter in the
``Header.fromtextfile()`` and ``Header.totextfile()`` methods. Although
``endcard=False`` was a reasonable default assumption, there are still text
dumps of FITS headers that include the END card, so this should have been
more flexible. (#176)
- Fixed a crash when running fitsdiff on two empty (that is, zero row) tables.
(#178)
- Fixed an issue where opening files containing random groups HDUs in update
mode could cause an unnecessary rewrite of the file even if none of the
data is modified. (#179)
- Fixed a bug that could caused a deadlock in the filesystem on OSX if PyFITS
is used with Numpy 1.7 in some cases. (#180)
- Fixed a crash when generating diff reports from diffs using the
``ignore_comments`` options. (#181)
- Fixed some bugs with WCS Paper IV record-valued keyword cards:
- Cards that looked kind of like RVKCs but were not intended to be were
over-permissively treated as such--commentary keywords like COMMENT and
HISTORY were particularly affected. (#183)
- Looking up a card in a header by its standard FITS keyword only should
always return the raw value of that card. That way cards containing
values that happen to valid RVKCs but were not intended to be will still
be treated like normal cards. (#184)
- Looking up a RVKC in a header with only part of the field-specifier (for
example "DP1.AXIS" instead of "DP1.AXIS.1") was implicitly treated as a
wildcard lookup. (#184)
- Fixed a crash when diffing two FITS files where at least one contains a
compressed image HDU which was not recognized as an image instead of a
table. (#187)
- Fixed bugs in the backwards compatibility layer for the ``CardList.index``
and ``CardList.count`` methods. (#190)
- Improved ``__repr__`` and text file representation of cards with long values
that are split into CONTINUE cards. (#193)
- Fixed a crash when trying to assign a long (> 72 character) value to blank
('') keywords. This also changed how blank keywords are represented--there
are still exactly 8 spaces before any commentary content can begin; this
*may* affect the exact display of header cards that assumed there could be
fewer spaces in a blank keyword card before the content begins. However, the
current approach is more in line with the requirements of the FITS standard.
(#194)
3.0.10 (2013-01-02)
-------------------
- Improved handling of scaled images and pseudo-unsigned integer images in
compressed image HDUs. They now work more transparently like normal image
HDUs with support for the ``do_not_scale_image_data`` and ``uint`` options,
as well as ``scale_back`` and ``save_backup``. The ``.scale()`` method
works better too. Backported from 3.1.1. (#88)
- Permits non-string values for the EXTNAME keyword when reading in a file,
rather than throwing an exception due to the malformatting. Added
verification for the format of the EXTNAME keyword when writing. Backported
from 3.1.1. (#96)
- Added support for EXTNAME and EXTVER in PRIMARY HDUs. That is, if EXTNAME
is specified in the header, it will also be reflected in the ``.name``
attribute and in ``pyfits.info()``. These keywords used to be verbotten in
PRIMARY HDUs, but the latest version of the FITS standard allows them.
Backported from 3.1.1. (#151)
- HCOMPRESS can again be used to compress data cubes (and higher-dimensional
arrays) so long as the tile size is effectively 2-dimensional. In fact,
PyFITS will not automatically use compatible tile sizes even if they're not
explicitly specified. Backported from 3.1.1. (#171)
- Fixed a bug when writing out files containing zero-width table columns,
where the TFIELDS keyword would be updated incorrectly, leaving the table
largely unreadable. Backported from 3.1.0. (#174)
- Fixed an issue where opening files containing random groups HDUs in update
mode could cause an unnecessary rewrite of the file even if none of the
data is modified. Backported from 3.1.1. (#179)
- Fixed a bug that could caused a deadlock in the filesystem on OSX if PyFITS
is used with Numpy 1.7 in some cases. Backported from 3.1.1. (#180)
3.1 (2012-08-08)
----------------
Highlights
^^^^^^^^^^
- The ``Header`` object has been significantly reworked, and ``CardList``
objects are now deprecated (their functionality folded into the ``Header``
class). See API Changes below for more details.
- Memory maps are now used by default to access HDU data. See API Changes
below for more details.
- Now includes a new version of the ``fitsdiff`` program for comparing two
FITS files, and a new FITS comparison API used by ``fitsdiff``. See New
Features below.
API Changes
^^^^^^^^^^^
- The ``Header`` class has been rewritten, and the ``CardList`` class is
deprecated. Most of the basic details of working with FITS headers are
unchanged, and will not be noticed by most users. But there are differences
in some areas that will be of interest to advanced users, and to application
developers. For full details of the changes, see the "Header Interface
Transition Guide" section in the PyFITS documentation. See ticket #64 on
the PyFITS Trac for futher details and background. Some highlights are
listed below:
* The Header class now fully implements the Python dict interface, and can
be used interchangably with a dict, where the keys are header keywords.
* New keywords can be added to the header using normal keyword assignment
(previously it was necessary to use ``Header.update`` to add new
keywords). For example::
>>> header['NAXIS'] = 2
will update the existing 'FOO' keyword if it already exists, or add a new
one if it doesn't exist, just like a dict.
* It is possible to assign both a value and a comment at the same time using
a tuple::
>>> header['NAXIS'] = (2, 'Number of axes')
* To add/update a new card and ensure it's added in a specific location, use
``Header.set()``::
>>> header.set('NAXIS', 2, 'Number of axes', after='BITPIX')
This works the same as the old ``Header.update()``. ``Header.update()``
still works in the old way too, but is deprecated.
* Although ``Card`` objects still exist, it generally is not necessary to
work with them directly. ``Header.ascardlist()``/``Header.ascard`` are
deprecated and should not be used. To directly access the ``Card``
objects in a header, use ``Header.cards``.
* To access card comments, it is still possible to either go through the
card itself, or through ``Header.comments``. For example::
>>> header.cards['NAXIS'].comment
Number of axes
>>> header.comments['NAXIS']
Number of axes
* ``Card`` objects can now be used interchangeably with
``(keyword, value, comment)`` 3-tuples. They still have ``.value`` and
``.comment`` attributes as well. The ``.key`` attribute has been renamed
to ``.keyword`` for consistency, though ``.key`` is still supported (but
deprecated).
- Memory mapping is now used by default to access HDU data. That is,
``pyfits.open()`` uses ``memmap=True`` as the default. This provides better
performance in the majority of use cases--there are only some I/O intensive
applications where it might not be desirable. Enabling mmap by default also
enabled finding and fixing a large number of bugs in PyFITS' handling of
memory-mapped data (most of these bug fixes were backported to PyFITS
3.0.5). (#85)
* A new ``pyfits.USE_MEMMAP`` global variable was added. Set
``pyfits.USE_MEMMAP = False`` to change the default memmap setting for
opening files. This is especially useful for controlling the behavior in
applications where pyfits is deeply embedded.
* Likewise, a new ``PYFITS_USE_MEMMAP`` environment variable is supported.
Set ``PYFITS_USE_MEMMAP = 0`` in your environment to change the default
behavior.
- The ``size()`` method on HDU objects is now a ``.size`` property--this
returns the size in bytes of the data portion of the HDU, and in most cases
is equivalent to ``hdu.data.nbytes`` (#83)
- ``BinTableHDU.tdump`` and ``BinTableHDU.tcreate`` are deprecated--use
``BinTableHDU.dump`` and ``BinTableHDU.load`` instead. The new methods
output the table data in a slightly different format from previous versions,
which places quotes around each value. This format is compatible with data
dumps from previous versions of PyFITS, but not vice-versa due to a parsing
bug in older versions.
- Likewise the ``pyfits.tdump`` and ``pyfits.tcreate`` convenience function
versions of these methods have been renamed ``pyfits.tabledump`` and
``pyfits.tableload``. The old deprecated, but currently retained for
backwards compatibility. (r1125)
- A new global variable ``pyfits.EXTENSION_NAME_CASE_SENSITIVE`` was added.
This serves as a replacement for ``pyfits.setExtensionNameCaseSensitive``
which is not deprecated and may be removed in a future version. To enable
case-sensitivity of extension names (i.e. treat 'sci' as distict from 'SCI')
set ``pyfits.EXTENSION_NAME_CASE_SENSITIVE = True``. The default is
``False``. (r1139)
- A new global configuration variable ``pyfits.STRIP_HEADER_WHITESPACE`` was
added. By default, if a string value in a header contains trailing
whitespace, that whitespace is automatically removed when the value is read.
Now if you set ``pyfits.STRIP_HEADER_WHITESPACE = False`` all whitespace is
preserved. (#146)
- The old ``classExtensions`` extension mechanism (which was deprecated in
PyFITS 3.0) is removed outright. To our knowledge it was no longer used
anywhere. (r1309)
- Warning messages from PyFITS issued through the Python warnings API are now
output to stderr instead of stdout, as is the default. PyFITS no longer
modifies the default behavior of the warnings module with respect to which
stream it outputs to. (r1319)
- The ``checksum`` argument to ``pyfits.open()`` now accepts a value of
'remove', which causes any existing CHECKSUM/DATASUM keywords to be ignored,
and removed when the file is saved.
New Features
^^^^^^^^^^^^
- Added support for the proposed "FITS" extension HDU type. See
http://listmgr.cv.nrao.edu/pipermail/fitsbits/2002-April/001094.html. FITS
HDUs contain an entire FITS file embedded in their data section. `FitsHDU`
objects work like other HDU types in PyFITS. Their ``.data`` attribute
returns the raw data array. However, they have a special ``.hdulist``
attribute which processes the data as a FITS file and returns it as an
in-memory HDUList object. FitsHDU objects also support a
``FitsHDU.fromhdulist()`` classmethod which returns a new `FitsHDU` object
that embeds the supplied HDUList. (#80)
- Added a new ``.is_image`` attribute on HDU objects, which is True if the HDU
data is an 'image' as opposed to a table or something else. Here the
meaning of 'image' is fairly loose, and mostly just means a Primary or Image
extension HDU, or possibly a compressed image HDU (#71)
- Added an ``HDUList.fromstring`` classmethod which can parse a FITS file
already in memory and instantiate and ``HDUList`` object from it. This
could be useful for integrating PyFITS with other libraries that work on
FITS file, such as CFITSIO. It may also be useful in streaming
applications. The name is a slight misnomer, in that it actually accepts
any Python object that implements the buffer interface, which includes
``bytes``, ``bytearray``, ``memoryview``, ``numpy.ndarray``, etc. (#90)
- Added a new ``pyfits.diff`` module which contains facilities for comparing
FITS files. One can use the ``pyfits.diff.FITSDiff`` class to compare two
FITS files in their entirety. There is also a ``pyfits.diff.HeaderDiff``
class for just comparing two FITS headers, and other similar interfaces.
See the PyFITS Documentation for more details on this interface. The
``pyfits.diff`` module powers the new ``fitsdiff`` program installed with
PyFITS. After installing PyFITS, run ``fitsdiff --help`` for usage details.
- ``pyfits.open()`` now accepts a ``scale_back`` argument. If set to
``True``, this automatically scales the data using the original BZERO and
BSCALE parameters the file had when it was first opened, if any, as well as
the original BITPIX. For example, if the original BITPIX were 16, this
would be equivalent to calling ``hdu.scale('int16', 'old')`` just before
calling ``flush()`` or ``close()`` on the file. This option applies to all
HDUs in the file. (#120)
- ``pyfits.open()`` now accepts a ``save_backup`` argument. If set to
``True``, this automatically saves a backup of the original file before
flushing any changes to it (this of course only applies to update and append
mode). This may be especially useful when working with scaled image data.
(#121)
Changes in Behavior
^^^^^^^^^^^^^^^^^^^
- Warnings from PyFITS are not output to stderr by default, instead of stdout
as it has been for some time. This is contrary to most users' expectations
and makes it more difficult for them to separate output from PyFITS from the
desired output for their scripts. (r1319)
Bug Fixes
^^^^^^^^^
- Fixed ``pyfits.tcreate()`` (now ``pyfits.tableload()``) to be more robust
when encountering blank lines in a column definition file (#14)
- Fixed a fairly rare crash that could occur in the handling of CONTINUE cards
when using Numpy 1.4 or lower (though 1.4 is the oldest version supported by
PyFITS). (r1330)
- Fixed ``_BaseHDU.fromstring`` to actually correctly instantiate an HDU
object from a string/buffer containing the header and data of that HDU.
This allowed for the implementation of ``HDUList.fromstring`` described
above. (#90)
- Fixed a rare corner case where, in some use cases, (mildly, recoverably)
malformatted float values in headers were not properly returned as floats.
(#137)
- Fixed a corollary to the previous bug where float values with a leading zero
before the decimal point had the leading zero unnecessarily removed when
saving changes to the file (eg. "0.001" would be written back as ".001" even
if no changes were otherwise made to the file). (#137)
- When opening a file containing CHECKSUM and/or DATASUM keywords in update
mode, the CHECKSUM/DATASUM are updated and preserved even if the file was
opened with checksum=False. This change in behavior prevents checksums from
being unintentionally removed. (#148)
- Fixed a bug where ``ImageHDU.scale(option='old')`` wasn't working at all--it
was not restoring the image to its original BSCALE and BZERO values. (#162)
- Fixed a bug when writing out files containing zero-width table columns,
where the TFIELDS keyword would be updated incorrectly, leaving the table
largely unreadable. This fix will be backported to the 3.0.x series in
version 3.0.10. (#174)
3.0.9 (2012-08-06)
------------------
This is a bug fix release for the 3.0.x series.
Bug Fixes
^^^^^^^^^
- Fixed ``Header.values()``/``Header.itervalues()`` and ``Header.items()``/
``Header.iteritems()`` to correctly return the different values for
duplicate keywords (particularly commentary keywords like HISTORY and
COMMENT). This makes the old Header implementation slightly more compatible
with the new implementation in PyFITS 3.1. (#127)
.. note::
This fix did not change the existing behavior from earlier PyFITS
versions where ``Header.keys()`` returns all keywords in the header with
duplicates removed. PyFITS 3.1 changes that behavior, so that
``Header.keys()`` includes duplicates.
- Fixed a bug where ``ImageHDU.scale(option='old')`` wasn't working at all--it
was not restoring the image to its original BSCALE and BZERO values. (#162)
- Fixed a bug where opening a file containing compressed image HDUs in
'update' mode and then immediately closing it without making any changes
caused the file to be rewritten unncessarily. (#167)
- Fixed two memory leaks that could occur when writing compressed image data,
or in some cases when opening files containing compressed image HDUs in
'update' mode. (#168)
3.0.8 (2012-06-04)
------------------
Changes in Behavior
^^^^^^^^^^^^^^^^^^^
- Prior to this release, image data sections did not work with scaled
data--that is, images with non-trivial BSCALE and/or BZERO values.
Previously, in order to read such images in sections, it was necessary to
manually apply the BSCALE+BZERO to each section. It's worth noting that
sections *did* support pseudo-unsigned ints (flakily). This change just
extends that support for general BSCALE+BZERO values.
Bug Fixes
^^^^^^^^^
- Fixed a bug that prevented updates to values in boolean table columns from
being saved. This turned out to be a symptom of a deeper problem that could
prevent other table updates from being saved as well. (#139)
- Fixed a corner case in which a keyword comment ending with the string "END"
could, in some circumstances, cause headers (and the rest of the file after
that point) to be misread. (#142)
- Fixed support for scaled image data and psuedo-unsigned ints in image data
sections (``hdu.section``). Previously this was not supported at all. At
some point support was supposedly added, but it was buggy and incomplete.
Now the feature seems to work much better. (#143)
- Fixed the documentation to point out that image data sections *do* support
non-contiguous slices (and have for a long time). The documentation was
never updated to reflect this, and misinformed users that only contiguous
slices were supported, leading to some confusion. (#144)
- Fixed a bug where creating an ``HDUList`` object containing multiple PRIMARY
HDUs caused an infinite recursion when validating the object prior to
writing to a file. (#145)
- Fixed a rare but serious case where saving an update to a file that
previously had a CHECKSUM and/or DATASUM keyword, but removed the checksum
in saving, could cause the file to be slightly corrupted and unreadable.
(#147)
- Fixed problems with reading "non-standard" FITS files with primary headers
containing SIMPLE = F. PyFITS has never made many guarantees as to how such
files are handled. But it should at least be possible to read their
headers, and the data if possible. Saving changes to such a file should not
try to prepend an unwanted valid PRIMARY HDU. (#157)
- Fixed a bug where opening an image with ``disable_image_compression = True``
caused compression to be disabled for all subsequent ``pyfits.open()`` calls.
(r1651)
3.0.7 (2012-04-10)
------------------
Changes in Behavior
^^^^^^^^^^^^^^^^^^^
- Slices of GroupData objects now return new GroupData objects instead of
extended multi-row _Group objects. This is analogous to how PyFITS 3.0 fixed
FITS_rec slicing, and should have been fixed for GroupData at the same time.
The old behavior caused bugs where functions internal to Numpy expected that
slicing an ndarray would return a new ndarray. As this is a rare usecase
with a rare feature most users are unlikely to be affected by this change.
- The previously internal _Group object for representing individual group
records in a GroupData object are renamed Group and are now a public
interface. However, there's almost no good reason to create Group objects
directly, so it shouldn't be considered a "new feature".
- An annoyance from PyFITS 3.0.6 was fixed, where the value of the EXTEND
keyword was always being set to F if there are not actually any extension
HDUs. It was unnecessary to modify this value.
Bug Fixes
^^^^^^^^^
- Fixed GroupData objects to return new GroupData objects when sliced instead
of _Group record objects. See "Changes in behavior" above for more details.
- Fixed slicing of Group objects--previously it was not possible to slice
slice them at all.
- Made it possible to assign `np.bool_` objects as header values. (#123)
- Fixed overly strict handling of the EXTEND keyword; see "Changes in
behavior" above. (#124)
- Fixed many cases where an HDU's header would be marked as "modified" by
PyFITS and rewritten, even when no changes to the header are necessary.
(#125)
- Fixed a bug where the values of the PTYPEn keywords in a random groups HDU
were forced to be all lower-case when saving the file. (#130)
- Removed an unnecessary inline import in `ExtensionHDU.__setattr__` that was
causing some slowdown when opening files containing a large number of
extensions, plus a few other small (but not insignficant) performance
improvements thanks to Julian Taylor. (#133)
- Fixed a regression where header blocks containing invalid end-of-header
padding (i.e. null bytes instead of spaces) couldn't be parsed by PyFITS.
Such headers can be parsed again, but a warning is raised, as such headers
are not valid FITS. (#136)
- Fixed a memory leak where table data in random groups HDUs weren't being
garbage collected. (#138)
3.0.6 (2012-02-29)
------------------
Highlights
^^^^^^^^^^
The main reason for this release is to fix an issue that was introduced in
PyFITS 3.0.5 where merely opening a file containing scaled data (that is, with
non-trivial BSCALE and BZERO keywords) in 'update' mode would cause the data
to be automatically rescaled--possibly converting the data from ints to
floats--as soon as the file is closed, even if the application did not touch
the data. Now PyFITS will only rescale the data in an extension when the data
is actually accessed by the application. So opening a file in 'update' mode
in order to modify the header or append new extensions will not cause any
change to the data in existing extensions.
This release also fixes a few Windows-specific bugs found through more
extensive Windows testing, and other miscellaneous bugs.
Bug Fixes
^^^^^^^^^
- More accurate error messages when opening files containing invalid header
cards. (#109)
- Fixed a possible reference cycle/memory leak that was caught through more
extensive testing on Windows. (#112)
- Fixed 'ostream' mode to open the underlying file in 'wb' mode instead of 'w'
mode. (#112)
- Fixed a Windows-only issue where trying to save updates to a resized FITS
file could result in a crash due to there being open mmaps on that file.
(#112)
- Fixed a crash when trying to create a FITS table (i.e. with new_table())
from a Numpy array containing bool fields. (#113)
- Fixed a bug where manually initializing an ``HDUList`` with a list of of
HDUs wouldn't set the correct EXTEND keyword value on the primary HDU.
(#114)
- Fixed a crash that could occur when trying to deepcopy a Header in Python <
2.7. (#115)
- Fixed an issue where merely opening a scaled image in 'update' mode would
cause the data to be converted to floats when the file is closed. (#119)
3.0.5 (2012-01-30)
------------------
- Fixed a crash that could occur when accessing image sections of files
opened with memmap=True. (r1211)
- Fixed the inconsistency in the behavior of files opened in 'readonly' mode
when memmap=True vs. when memmap=False. In the latter case, although
changes to array data were not saved to disk, it was possible to update the
array data in memory. On the other hand with memmap=True, 'readonly' mode
prevented even in-memory modification to the data. This is what
'copyonwrite' mode was for, but difference in behavior was confusing. Now
'readonly' is equivalent to 'copyonwrite' when using memmap. If the old
behavior of denying changes to the array data is necessary, a new
'denywrite' mode may be used, though it is only applicable to files opened
with memmap. (r1275)
- Fixed an issue where files opened with memmap=True would return image data
as a raw numpy.memmap object, which can cause some unexpected
behaviors--instead memmap object is viewed as a numpy.ndarray. (r1285)
- Fixed an issue in Python 3 where a workaround for a bug in Numpy on Python 3
interacted badly with some other software, namely to vo.table package (and
possibly others). (r1320, r1337, and #110)
- Fixed buggy behavior in the handling of SIGINTs (i.e. Ctrl-C keyboard
interrupts) while flushing changes to a FITS file. PyFITS already prevented
SIGINTs from causing an incomplete flush, but did not clean up the signal
handlers properly afterwards, or reraise the keyboard interrupt once the
flush was complete. (r1321)
- Fixed a crash that could occur in Python 3 when opening files with checksum
checking enabled. (r1336)
- Fixed a small bug that could cause a crash in the `StreamingHDU` interface
when using Numpy below version 1.5.
- Fixed a crash that could occur when creating a new `CompImageHDU` from an
array of big-endian data. (#104)
- Fixed a crash when opening a file with extra zero padding at the end.
Though FITS files should not have such padding, it's not explictly forbidden
by the format either, and PyFITS shouldn't stumble over it. (#106)
- Fixed a major slowdown in opening tables containing large columns of string
values. (#111)
3.0.4 (2011-11-22)
------------------
- Fixed a crash when writing HCOMPRESS compressed images that could happen on
Python 2.5 and 2.6. (r1217)
- Fixed a crash when slicing an table in a file opened in 'readonly' mode with
memmap=True. (r1230)
- Writing changes to a file or writing to a new file verifies the output in
'fix' mode by default instead of 'exception'--that is, PyFITS will
automatically fix common FITS format errors rather than raising an
exception. (r1243)
- Fixed a bug where convenience functions such as getval() and getheader()
crashed when specifying just 'PRIMARY' as the extension to use (r1263).
- Fixed a bug that prevented passing keyword arguments (beyond the standard
data and header arguments) as positional arguments to the constructors of
extension HDU classes.
- Fixed some tests that were failing on Windows--in this case the tests
themselves failed to close some temp files and Windows refused to delete them
while there were still open handles on them. (r1295)
- Fixed an issue with floating point formatting in header values on Python 2.5
for Windows (and possibly other platforms). The exponent was zero-padded to
3 digits; although the FITS standard makes no specification on this, the
formatting is now normalized to always pad the exponent to two digits.
(r1295)
- Fixed a bug where long commentary cards (such as HISTORY and COMMENT) were
broken into multiple CONTINUE cards. However, commentary cards are not
expected to be found in CONTINUE cards. Instead these long cards are broken
into multiple commentary cards. (#97)
- GZIP/ZIP-compressed FITS files can be detected and opened regardless of
their filename extension. (#99)
- Fixed a serious bug where opening scaled images in 'update' mode and then
closing the file without touching the data would cause the file to be
corrupted. (#101)
3.0.3 (2011-10-05)
------------------
- Fixed several small bugs involving corner cases in record-valued keyword
cards (#70)
- In some cases HDU creation failed if the first keyword value in the header
was not a string value (#89)
- Fixed a crash when trying to compute the HDU checksum when the data array
contains an odd number of bytes (#91)
- Disabled an unnecessary warning that was displayed on opening compressed
HDUs with disable_image_compression = True (#92)
- Fixed a typo in code for handling HCOMPRESS compressed images.
3.0.2 (2011-09-23)
------------------
- The ``BinTableHDU.tcreate`` method and by extension the ``pyfits.tcreate``
function don't get tripped up by blank lines anymore (#14)
- The presence, value, and position of the EXTEND keyword in Primary HDUs is
verified when reading/writing a FITS file (#32)
- Improved documentation (in warning messages as well as in the handbook) that
PyFITS uses zero-based indexing (as one would expect for C/Python code, but
contrary to the PyFITS standard which was written with FORTRAN in mind)
(#68)
- Fixed a bug where updating a header card comment could cause the value to be
lost if it had not already been read from the card image string.
- Fixed a related bug where changes made directly to Card object in a header
(i.e. assigning directly to card.value or card.comment) would not propagate
when flushing changes to the file (#69) [Note: This and the bug above it
were originally reported as being fixed in version 3.0.1, but the fix was
never included in the release.]
- Improved file handling, particularly in Python 3 which had a few small file
I/O-related bugs (#76)
- Fixed a bug where updating a FITS file would sometimes cause it to lose its
original file permissions (#79)
- Fixed the handling of TDIMn keywords; 3.0 added support for them, but got
the axis order backards (they were treated as though they were row-major)
(#82)
- Fixed a crash when a FITS file containing scaled data is opened and
immediately written to a new file without explicitly viewing the data first
(#84)
- Fixed a bug where creating a table with columns named either 'names' or
'formats' resulted in an infinite recursion (#86)
3.0.1 (2011-09-12)
------------------
- Fixed a bug where updating a header card comment could cause the value to be
lost if it had not already been read from the card image string.
- Changed ``_TableBaseHDU.data`` so that if the data contain an empty table a
``FITS_rec`` object with zero rows is returned rather than ``None``.
- The ``.key`` attribute of ``RecordValuedKeywordCards`` now returns the full
keyword+field-specifier value, instead of just the plain keyword (#46)
- Fixed a related bug where changes made directly to Card object in a header
(i.e. assigning directly to card.value or card.comment) would not propagate
when flushing changes to the file (#69)
- Fixed a bug where writing a table with zero rows could fail in some cases
(#72)
- Miscellanous small bug fixes that were causing some tests to fail,
particularly on Python 3 (#74, #75)
- Fixed a bug where creating a table column from an array in non-native byte
order would not preserve the byte order, thus interpreting the column array
using the wrong byte order (#77)
3.0.0 (2011-08-23)
--------------------
- Contains major changes, bumping the version to 3.0
- Large amounts of refactoring and reorganization of the code; tried to
preserve public API backwards-compatibility with older versions (private API
has many changes and is not guaranteed to be backwards-compatible). There
are a few small public API changes to be aware of:
* The pyfits.rec module has been removed completely. If your version of
numpy does not have the numpy.core.records module it is too old to be used
with PyFITS.
* The ``Header.ascardlist()`` method is deprecated--use the ``.ascard``
attribute instead.
* ``Card`` instances have a new ``.cardimage`` attribute that should be used
rather than ``.ascardimage()``, which may become deprecated.
* The ``Card.fromstring()`` method is now a classmethod. It returns a new
``Card`` instance rather than modifying an existing instance.
* The ``req_cards()`` method on HDU instances has changed: The ``pos``
argument is not longer a string. It is either an integer value (meaning
the card's position must match that value) or it can be a function that
takes the card's position as it's argument, and returns True if the
position is valid. Likewise, the ``test`` argument no longer takes a
string, but instead a function that validates the card's value and returns
True or False.
* The ``get_coldefs()`` method of table HDUs is deprecated. Use the
``.columns`` attribute instead.
* The ``ColDefs.data`` attribute is deprecated--use ``ColDefs.columns``
instead (though in general you shouldn't mess with it directly--it might
become internal at some point).
* ``FITS_record`` objects take ``start`` and ``end`` as arguments instead of
``startColumn`` and ``endColumn`` (these are rarely created manually, so
it's unlikely that this change will affect anyone).
* ``BinTableHDU.tcreate()`` is now a classmethod, and returns a new
``BinTableHDU`` instance.
* Use ``ExtensionHDU`` and ``NonstandardExtHDU`` for making new extension HDU
classes. They are now public interfaces, wheres previously they were
private and prefixed with underscores.
* Possibly others--please report if you find any changes that cause
difficulties.
- Calls to deprecated functions will display a Deprecation warning. However,
in Python 2.7 and up Deprecation warnings are ignored by default, so run
Python with the `-Wd` option to see if you're using any deprecated
functions. If we get close to actually removing any functions, we might
make the Deprecation warnings display by default.
- Added basic Python 3 support
- Added support for multi-dimensional columns in tables as specified by the
TDIMn keywords (#47)
- Fixed a major memory leak that occurred when creating new tables with the
``new_table()`` function (#49)
be padded with zero-bytes) vs ASCII tables (where strings are padded with
spaces) (#15)
- Fixed a bug in which the case of Random Access Group parameters names was not
preserved when writing (#41)
- Added support for binary table fields with zero width (#42)
- Added support for wider integer types in ASCII tables; although this is non-
standard, some GEIS images require it (#45)
- Fixed a bug that caused the index_of() method of HDULists to crash when the
HDUList object is created from scratch (#48)
- Fixed the behavior of string padding in binary tables (where strings should
be padded with nulls instead of spaces)
- Fixed a rare issue that caused excessive memory usage when computing
checksums using a non-standard block size (see r818)
- Add support for forced uint data in image sections (#53)
- Fixed an issue where variable-length array columns were not extended when
creating a new table with more rows than the original (#54)
- Fixed tuple and list-based indexing of FITS_rec objects (#55)
- Fixed an issue where BZERO and BSCALE keywords were appended to headers in
the wrong location (#56)
- ``FITS_record`` objects (table rows) have full slicing support, including
stepping, etc. (#59)
- Fixed a bug where updating multiple files simultaneously (such as when
running parallel processes) could lead to a race condition with mktemp()
(#61)
- Fixed a bug where compressed image headers were not in the order expected by
the funpack utility (#62)
jperkin
pushed a commit
that referenced
this pull request
Mar 14, 2014
--- 3.1 --- * Issue #161: Restore Features functionality to allow backward compatibility (for Features) until the uses of that functionality is sufficiently removed. ----- 3.0.2 ----- * Correct typo in previous bugfix. ----- 3.0.1 ----- * Issue #157: Restore support for Python 2.6 in bootstrap script where ``zipfile.ZipFile`` does not yet have support for context managers. --- 3.0 --- * Issue #125: Prevent Subversion support from creating a ~/.subversion directory just for checking the presence of a Subversion repository. * Issue #12: Namespace packages are now imported lazily. That is, the mere declaration of a namespace package in an egg on ``sys.path`` no longer causes it to be imported when ``pkg_resources`` is imported. Note that this change means that all of a namespace package's ``__init__.py`` files must include a ``declare_namespace()`` call in order to ensure that they will be handled properly at runtime. In 2.x it was possible to get away without including the declaration, but only at the cost of forcing namespace packages to be imported early, which 3.0 no longer does. * Issue #148: When building (bdist_egg), setuptools no longer adds ``__init__.py`` files to namespace packages. Any packages that rely on this behavior will need to create ``__init__.py`` files and include the ``declare_namespace()``. * Issue #7: Setuptools itself is now distributed as a zip archive in addition to tar archive. ez_setup.py now uses zip archive. This approach avoids the potential security vulnerabilities presented by use of tar archives in ez_setup.py. It also leverages the security features added to ZipFile.extract in Python 2.7.4. * Issue #65: Removed deprecated Features functionality. * Pull Request #28: Remove backport of ``_bytecode_filenames`` which is available in Python 2.6 and later, but also has better compatibility with Python 3 environments. * Issue #156: Fix spelling of __PYVENV_LAUNCHER__ variable.
jperkin
pushed a commit
that referenced
this pull request
Aug 12, 2014
Upstream changes:
3.3.3 2014-08-04 15:50:00+0900
- No code changes from 3.3.2, just re-packaging.
3.3.2 2014-08-04 12:40:00+0900
[IMPROVEMENT]
- #127 Improve generating temporary file name
3.3.1 2014-08-03 11:45:40+0900
[ANNOUNCE]
- Now Xslate has new co-maintainers (those who can maintain and release
Xslate): lestrrat, syohex, and tokuhirom
[BUG FIXES]
- #126 Fix a typo in naming tempfiles (Hugmeir)
[DOCMENT]
- #125 Update document on Text::Xslate->bridge() and Builtin.pod
(Mike Raynham)
3.3.0 2014-08-03 11:54:02+0900
(mis-packaging release)
3.2.5 2014-07-15 08:18:31+0900
[TEST FIXES]
- No CGI.pm, which is no longer a standard module
jperkin
pushed a commit
that referenced
this pull request
Dec 1, 2014
Changelog:
## JFlex 1.6.0
- Unicode 7.0 is supported.
- In %unicode mode, supplementary code points are now handled properly.
. Regular expressions are now code-point based, rather than code-unit/
char based.
. Input streams are read as code point sequences - properly paired
surrogate code units are read as a single character.
. All supported Unicode properties now match supplementary characters
when Unicode 3.0 or above is specified, or when no version is
specified, causing the default Unicode version, Unicode 7.0 in this
release, to be used.
- New \u{...} escape sequence allows code points (and whitespace-separated
sequences of code points) to be specified as 1-6 hexadecimal digit values.
- Characters in matches printed in %debug mode are now Unicode escaped
(\uXXXX) when they are outside the range 32..127.
- fixed bug #127, detect javadoc class comment when followed by annotation(s)
- removed the "switch" and "table" code generation options
- By default no InputStream constructor is included in the generated
scanner. The capability to include one is deprecated and will be
removed in JFlex 1.7.
## JFlex 1.5.1 (Mar 21, 2014)
- fixed bug #126, problem calling ./jflex start scripts
- fixed bug #125, minor documentation flaws
- further documentation and website updates
- JFlex now reports the correct version string
- added support for CUP2 with %cup2 switch, based on patch by Andreas Wenger
## JFlex 1.5.0 (Jan 21, 2014)
- the "switch" and "table" code generation options are deprecated
and will be removed in JFlex 1.6
- the JFlex license has been changed from GPL to BSD.
- updated JFlex to CUP version 0.11a.
- changed the build from Ant to Maven.
- JFlex now mostly conforms with Unicode Regular Expressions UTS#18
Basic Unicode Support - Level 1. Supplementary code points (above
the Basic Multilingual Plane) are not yet supported.
- new meta characters supported: `\s, \S, \d, \D, \w, \W`.
- nested character sets now supported, e.g. [[[ABC]D]E[FG]]
- new character set operations supported: union (e.g. [A||B]), intersection (e.g.
[A&&B]), set-difference (e.g. [A--B]), and symmetric difference (e.g. [A~~B]).
- the meaning of the dot (".") meta character has been changed from `[^\n]` to
`[^\n\r\u000B\u000C\u0085\u2028\u2029]`. Use the new `--legacydot` option to
cause "." to be interpreted as `[^\n]`.
- new `\R` meta character matches any newline:
`"\r\n" | [\n\r\u000B\u000C\u0085\u2028\u2029]`.
- new option --noinputstreamctor to not include an InputStream
constructor in the generated scanner.
- %include <file> can now be used in the rules section (bug #116)
- fixed bug #105 & #106 (yychar and zzAtBOL should be reset for nested input streams)
- fixed bug #107 (could not match input for empty string matches.)
- fixed bug #110 & #118 (properly update zzFin when reallocating zzBuffer)
- fixed bug #114 (noncompileable scanner generation when default locale is Turkish)
- fixed bug #113 (zzEOFDone not included with pushed nested stream state)
- fixed bug #103 (can't build examples/java/)
- fixed bug #104 (impossible char class range should trigger syntax error)
jperkin
pushed a commit
that referenced
this pull request
Mar 16, 2015
14.2 ---- * Issue #137: Update ``Distribution.hashcmp`` so that Distributions with None for pyversion or platform can be compared against Distributions defining those attributes. ------ 14.1.1 ------ * Issue #360: Removed undesirable behavior from test runs, preventing write tests and installation to system site packages. ---- 14.1 ---- * Pull Request #125: Add ``__ne__`` to Requirement class. * Various refactoring of easy_install.
jperkin
pushed a commit
that referenced
this pull request
Jun 17, 2015
## 1.3.2 ### Changes - now works and passes tests with Lua 5.3 - utils.import will NOT override global symbols (import 'math' caused global type() to be clobbered) - Updated pl.dir.file_op to return true on success and false on failure... - workaround for issues with pl.lapp with amalg.lua - will look at global LAPP_SCRIPT if arg[0] is nil ### Fixes - func was broken: do NOT use ipairs to iterate if __index is overriden! - issue #133 pretty.read (naively) confused by unbalanced brackets - xml attribute underscore fix for simple parser - Fix path.normpath - lexer: fix parsing block comments/string. fix hang on empty string. - Fixed utils.execute returning different values for Lua 5.1 and Lua 5.2 - Issue #97; fixed attempt to put a month into a day - problem with tablex.count_map with custom comparison ### Features - Add Python style url module for quote and unquote. - stringx.quote_string, which scans for embedded long-string quote matches and escapes them by creating a long-string quote. - issue #117: tablex.range now works with decreasing numbers, consistent with numerical for loop - utils.import will NOT override global symbols (import 'math' caused global type() to be clobbered) - issue #125: DOCTYPE ignored in xml documents as well - Allow XML tostring() function to customize the default prefacing with <?xml...> - More Robust Quoted Strings - lapp: improved detection of unsupported short flags ## 1.3.0 ### Changes - class: RIP base method - not possible to implement correctly - lapp: short flags can now always be followed directly by their value, for instance, `-I/usr/include/lua/5.1` - Date: new explicit `Date.Interval` class; `toUTC/toLocal` return new object; `Date.__tostring` always returns ISO 8601 times for exact serialization. `+/-` explicit operators. Date objects are explicitly flagged as being UTC or not. ### Fixes - class: super method fixed. - Date: DST is now accounted for properly. - Date: weekday calculation borked. ### Features - All tests pass with no-5.1-compatible Lua 5.2; now always uses `utils.load` and `utils.unpack` is always available. - types: new module containing `utils.is_xxx` methods plus new `to_bool`. - class: can be passed methods in a table (see `test=klass.lua`). This is particularly convenient for using from Moonscript. - general documentation improvements, e.g `class` ## 1.2.1 ### Changes - utils.set(get)fenv always defined (_not_ set as globals for 5.2 anymore!). These are defined in new module pl.compat, but still available through utils. - class.Frodo now puts 'Frodo' in _current environment_ ### Fixes - lapp.add_type was broken (Pete Kazmier) - class broke with classes that redefined __newindex - Set.isdisjoint was broken because of misspelling; default ctor Set() now works as expected - tablex.transform was broken; result now has same keys as original (CoolistheName007) - xml match not handling empty matches (royalbee) - pl.strict: assigning nil to global declares it, as God intended. (Pierre Chapuis) - tests all work with pl.strict - 5.2 compatible load now respects mode - tablex.difference thought that a value of `false` meant 'not present' (Andrew Starke) ### Features - tablex.sort(t) iterates over sorted keys, tablex.sortv(t) iterates over sorted values (Pete Kazmier) - tablex.readonly(t) creates a read-only proxy for a table (John Schember) - utils.is_empty(o) true if o==nil, o is an empty table, or o is an empty string (John Schember) - utils.executeex(cmd,bin) returns true if successful, return code, plus stdout and stderr output as strings. (tieske) - class method base for calling inherited methods (theypsilon) - class supports pre-constructor _create for making a custom self (used in pl.List) - xml HTML mode improvements - can parse non-trivial well-formed HTML documents. xml.parsehtml is a parse function, no longer a flag - if a LOM document has ordered attributes, use these when stringifying - xml.tostring has yet another extra parm to force prefacing with <?xml...> - lapp boolean flags may have `true` default - lapp slack mode where 'short' flags can be multi-char - test.asserteq etc take extra arg, which is extra level where error must be reported at - path.currentdir,chdir,rmdir,mkdir and dir as alias to lfs are exported; no dependencies on luafilesystem outside pl.path, making it easier to plug in different implementations.
mamash
pushed a commit
that referenced
this pull request
Apr 6, 2016
v2.1 - Issue #156 parsedatetime 2.0 doesn't work on py26 v2.0 - Issue #155 Relative times containing years fail when computed from a leap day - Issue #145 cal.parse('2015-11-18') returns November 19th 2015 - Issue #143 What is the second value returned by `parse`? - Issue #141 Bad test case in TestComplexDateTimes - Issue #123 update supporting files for v2.0 release - Issue #124 Put locales into config-files (yaml) - Issue #125 Remove extra files - Issue #137 Year is parsed wrongly if the date is of format MMM DD, YYxx xx:SS bug - Issue #136 Why I see 2016 instead of 2015? - Issue #133 Bug: "2015-01-01" is parsed as the current date. - Issue #126 "Unresolved attribute reference 'parse' for class 'object'... " in Pycharm IDE. bug - Issue #120 the pdt_locales/en_AU.py file uses en_A for the localID instead of en_AU - Issue #114 Dates in the format 'YYYY-MM-DD HH:MM' give the incorrect month and day - Issue #112 Document getting a time from parsedatetime into a standard Python structure - Issue #110 AttributeError when running in the context of an HTTP request - Issue #109 YearParseStyle is ignored for dates in MM/DD style - Issue #107 yyyy/mm/dd date format - Issue #105 "this week" is not parsed - Issue #103 get UTC times from parseDT - trouble with at 9:30 clock times being interpreted directly in UTC - Issue #100 Fractional deltas result in incoherent results. - PR #118 ADD: improve russian locale - PR #117 ADD: Russian Locale - PR #116 Fix spelling of "separator". - PR #115 Update README.rst - PR #113 Add datetime example to readme. - PR #111 Allowed real number appear in text like "5.5 days ago" v1.5 - Issue #99 Which year is implied when given just a month and day? Next and last? question - Issue #96 Word boundary issues for specials (on, at, in) in nlp - Issue #94 inconsistent application of sourceTime in Calendar.parseDT - Issue #87 nlp() doesn't recognize some "next ..." expressions - Issue #84 Afternoon? bug - Issue #82 'last week' and 'next week' are broken - Issue #81 parse returns default time of 0900 with dates like 'next friday' despite passed struct_time bug - Issue #78 Link for Travis in README is wrong - Issue #72 Enable travis - Issue #71 Calendar() class can not be initialized 1.4 (it's fine) - Issue #66 Unexpected struct_time flag with Calendar.parse on HTML <a href> string - Issue #65 NLP false positives - Issue #63 Supporting multiple shortweekday abbreviations - Issue #61 Short weekday abbreviations bug - Issue #56 Parse words to numbers (thirteen => 13) - Issue #54 testMonths fails - commit 107c7e4655 fix for issue 95 - parsing 'next june 15' - commit 2c0c8ec778 Fixed faulty test, "730am" parses as "73:0 am" which is a bug for a later day. - commit 6f244e891d Fix "ones" parsing as "1s." Require a word boundary between spelled numbers and units. - commit 035818edef Fix "1 day ago" parsing like "1d 1y ago" where "a" within the word "day" is interpreted as 1. - commit 45002e6eec Fixes "next week" and similar modifier + unit pairs in nlp() - commit 47d2e1d527 Fixed "last week" v1.4 - Updated setup.py for wheel compatibility - renamed README.txt to README.rst - renamed MANIFEST to MANIFEST.in - cleaned up a lot of the doc and notes - Commit 3fc165e701 mafagafo Now it works for Python 3.4.1 - Commit d5883801e7 borgstrom Restore Python 2.6 compatibility 1.3 - Issue #45 make a new release to really fix backwards compatibility - Issue #43 Please tag version 1.3 - Commit 29c5c8961d devainandor fixed Python 3 compatibility in pdtLocale_icu - Commit d7304f18f7 inean Fix support for 'now' when no modifiers are present - Commit 26bfc91c28 sashaacker Added parseDT method. - Commit 848deb47e2 rmecham Added support for dotted meridians. - Commit c821e08ce2 ccho-sevenrooms corrected misspelling of 'thirteen' - Biggest change is the addition of the nlp() function by Geoffrey Floyd: nlp() function that utilizes parse() after making judgements about what datetime information belongs together. It makes logical groupings based on proximity and returns a parsed datetime for each matched grouping of datetime text, along with location info within the given inputString.
jperkin
pushed a commit
that referenced
this pull request
Apr 7, 2016
v2.1 - Issue #156 parsedatetime 2.0 doesn't work on py26 v2.0 - Issue #155 Relative times containing years fail when computed from a leap day - Issue #145 cal.parse('2015-11-18') returns November 19th 2015 - Issue #143 What is the second value returned by `parse`? - Issue #141 Bad test case in TestComplexDateTimes - Issue #123 update supporting files for v2.0 release - Issue #124 Put locales into config-files (yaml) - Issue #125 Remove extra files - Issue #137 Year is parsed wrongly if the date is of format MMM DD, YYxx xx:SS bug - Issue #136 Why I see 2016 instead of 2015? - Issue #133 Bug: "2015-01-01" is parsed as the current date. - Issue #126 "Unresolved attribute reference 'parse' for class 'object'... " in Pycharm IDE. bug - Issue #120 the pdt_locales/en_AU.py file uses en_A for the localID instead of en_AU - Issue #114 Dates in the format 'YYYY-MM-DD HH:MM' give the incorrect month and day - Issue #112 Document getting a time from parsedatetime into a standard Python structure - Issue #110 AttributeError when running in the context of an HTTP request - Issue #109 YearParseStyle is ignored for dates in MM/DD style - Issue #107 yyyy/mm/dd date format - Issue #105 "this week" is not parsed - Issue #103 get UTC times from parseDT - trouble with at 9:30 clock times being interpreted directly in UTC - Issue #100 Fractional deltas result in incoherent results. - PR #118 ADD: improve russian locale - PR #117 ADD: Russian Locale - PR #116 Fix spelling of "separator". - PR #115 Update README.rst - PR #113 Add datetime example to readme. - PR #111 Allowed real number appear in text like "5.5 days ago" v1.5 - Issue #99 Which year is implied when given just a month and day? Next and last? question - Issue #96 Word boundary issues for specials (on, at, in) in nlp - Issue #94 inconsistent application of sourceTime in Calendar.parseDT - Issue #87 nlp() doesn't recognize some "next ..." expressions - Issue #84 Afternoon? bug - Issue #82 'last week' and 'next week' are broken - Issue #81 parse returns default time of 0900 with dates like 'next friday' despite passed struct_time bug - Issue #78 Link for Travis in README is wrong - Issue #72 Enable travis - Issue #71 Calendar() class can not be initialized 1.4 (it's fine) - Issue #66 Unexpected struct_time flag with Calendar.parse on HTML <a href> string - Issue #65 NLP false positives - Issue #63 Supporting multiple shortweekday abbreviations - Issue #61 Short weekday abbreviations bug - Issue #56 Parse words to numbers (thirteen => 13) - Issue #54 testMonths fails - commit 107c7e4655 fix for issue 95 - parsing 'next june 15' - commit 2c0c8ec778 Fixed faulty test, "730am" parses as "73:0 am" which is a bug for a later day. - commit 6f244e891d Fix "ones" parsing as "1s." Require a word boundary between spelled numbers and units. - commit 035818edef Fix "1 day ago" parsing like "1d 1y ago" where "a" within the word "day" is interpreted as 1. - commit 45002e6eec Fixes "next week" and similar modifier + unit pairs in nlp() - commit 47d2e1d527 Fixed "last week" v1.4 - Updated setup.py for wheel compatibility - renamed README.txt to README.rst - renamed MANIFEST to MANIFEST.in - cleaned up a lot of the doc and notes - Commit 3fc165e701 mafagafo Now it works for Python 3.4.1 - Commit d5883801e7 borgstrom Restore Python 2.6 compatibility 1.3 - Issue #45 make a new release to really fix backwards compatibility - Issue #43 Please tag version 1.3 - Commit 29c5c8961d devainandor fixed Python 3 compatibility in pdtLocale_icu - Commit d7304f18f7 inean Fix support for 'now' when no modifiers are present - Commit 26bfc91c28 sashaacker Added parseDT method. - Commit 848deb47e2 rmecham Added support for dotted meridians. - Commit c821e08ce2 ccho-sevenrooms corrected misspelling of 'thirteen' - Biggest change is the addition of the nlp() function by Geoffrey Floyd: nlp() function that utilizes parse() after making judgements about what datetime information belongs together. It makes logical groupings based on proximity and returns a parsed datetime for each matched grouping of datetime text, along with location info within the given inputString.
jperkin
pushed a commit
that referenced
this pull request
Nov 1, 2016
Version 1.8.0 (25 Oct 2016)
Daniel Stenberg (25 Oct 2016)
- RELEASE-NOTES: adjusted for 1.8.0
Kamil Dudka (20 Oct 2016)
- Revert "aes: the init function fails when OpenSSL has AES support"
This partially reverts commit f4f2298ef3635acd031cc2ee0e71026cdcda5864
because it caused the compatibility code to call initialization routines
redundantly, leading to memory leakage with OpenSSL 1.1 and broken curl
test-suite in Fedora:
88 bytes in 1 blocks are definitely lost in loss record 5 of 8
at 0x4C2DB8D: malloc (vg_replace_malloc.c:299)
by 0x72C607D: CRYPTO_zalloc (mem.c:100)
by 0x72A2480: EVP_CIPHER_meth_new (cmeth_lib.c:18)
by 0x4E5A550: make_ctr_evp.isra.0 (openssl.c:407)
by 0x4E5A8E8: _libssh2_init_aes_ctr (openssl.c:471)
by 0x4E5BB5A: libssh2_init (global.c:49)
Daniel Stenberg (19 Oct 2016)
- [Charles Collicutt brought this change]
libssh2_wait_socket: Fix comparison with api_timeout to use milliseconds (#134)
Fixes #74
- [Charles Collicutt brought this change]
Set err_msg on _libssh2_wait_socket errors (#135)
- Revert "travis: Test mbedtls too"
This reverts commit 3e6de50a24815e72ec5597947f1831f6083b7da8.
Travis doesn't seem to support the mbedtls-dev package
- maketgz: support "only" to only update version number locally
and fix the date output locale
- configure: make the --with-* options override the OpenSSL default
... previously it would default to OpenSSL even with the --with-[crypto]
options used unless you specificly disabled OpenSSL. Now, enabling another
backend will automatically disable OpenSSL if the other one is found.
- [Keno Fischer brought this change]
docs: Add documentation on new cmake/configure options
- [Keno Fischer brought this change]
configure: Add support for building with mbedtls
- [wildart brought this change]
travis: Test mbedtls too
- [wildart brought this change]
crypto: add support for the mbedTLS backend
Closes #132
- [wildart brought this change]
cmake: Add CLEAR_MEMORY option, analogously to that for autoconf
- README.md: fix link typo
- README: markdown version to look nicer on github
Viktor Szakats (5 Sep 2016)
- [Taylor Holberton brought this change]
openssl: add OpenSSL 1.1.0 compatibility
Daniel Stenberg (4 Sep 2016)
- [Antenore Gatta brought this change]
tests: HAVE_NETINET_IN_H was not defined correctly (#127)
Fixes #125
- SECURITY: fix web site typo
- SECURITY: security process
GitHub (14 Aug 2016)
- [Alexander Lamaison brought this change]
Basic dockerised test suite.
This introduces a test suite for libssh2. It runs OpenSSH in a Docker
container because that works well on Windows (via docker-machine) as
well as Linux. Presumably it works on Mac too with docker-machine, but
I've not tested that.
Because the test suite is docker-machine aware, you can also run it
against a cloud provider, for more realistic network testing, by setting
your cloud provider as your active docker machine. The Appveyor CI setup
in this commit does that because Appveyor doesn't support docker
locally.
Kamil Dudka (3 Aug 2016)
- [Viktor Szakats brought this change]
misc.c: Delete unused static variables
Closes #114
Daniel Stenberg (9 Apr 2016)
- [Will Cosgrove brought this change]
Merge pull request #103 from willco007/patch-2
Fix for security issue CVE-2016-0787
Alexander Lamaison (2 Apr 2016)
- [Zenju brought this change]
Fix MSVC 14 compilation errors
For _MSC_VER == 1900 these macros are not needed and create problems:
1>C:\Program Files (x86)\Windows Kits\10\Include\10.0.10240.0\ucrt\stdio.h(1925): warning C4005: 'snprintf': macro redefinition (compiling source file libssh2-files\src\mac.c)
1> \win32\libssh2_config.h(27): note: see previous definition of 'snprintf' (compiling source file libssh2-files\src\mac.c)
1>C:\Program Files (x86)\Windows Kits\10\Include\10.0.10240.0\ucrt\stdio.h(1927): fatal error C1189: #error: Macro definition of snprintf conflicts with Standard Library function declaration (compiling source file libssh2-files\src\mac.c)
Daniel Stenberg (26 Mar 2016)
- [Brad Harder brought this change]
_libssh2_channel_open: speeling error fixed in channel error message
Alexander Lamaison (15 Mar 2016)
- Link with crypt32.lib on Windows.
Makes linking with static OpenSSL work again. Although it's not
required for dynamic OpenSSL, it does no harm.
Fixes #98.
- [Craig A. Berry brought this change]
Tweak VMS help file building.
Primarily this is handling cases where top-level files moved into
the docs/ directory. I also corrected a typo and removed the
claim that libssh2 is public domain.
- [Craig A. Berry brought this change]
Build with standard stat structure on VMS.
This gets us large file support, is available on any VMS release
in the last decade and more, and gives stat other modern features
such as 64-bit ino_t.
- [Craig A. Berry brought this change]
Update vms/libssh2_config.h.
VMS does have stdlib.h, gettimeofday(), and OpenSSL. The latter
is appropriate to hard-wire in the configuration because it's
installed by default as part of the base operating system and
there is currently no libgcrypt port.
- [Craig A. Berry brought this change]
VMS can't use %zd for off_t format.
%z is a C99-ism that VMS doesn't currently have; even though the
compiler is C99-compliant, the library isn't quite. The off_t used
for the st_size element of the stat can be 32-bit or 64-bit, so
detect what we've got and pick a format accordingly.
- [Craig A. Berry brought this change]
Normalize line endings in libssh2_sftp_get_channel.3.
Somehow it got Windows-style CRLF endings so convert to just LF,
for consistency as well as not to confuse tools that will regard
the \r as content (e.g. the OpenVMS help librarian).
Dan Fandrich (29 Feb 2016)
- libgcrypt: Fixed a NULL pointer dereference on OOM
Daniel Stenberg (24 Feb 2016)
- [Viktor Szakats brought this change]
url updates, HTTP => HTTPS
Closes #87
Dan Fandrich (23 Feb 2016)
- RELEASE-NOTES: removed some duplicated names
jperkin
pushed a commit
that referenced
this pull request
Nov 28, 2016
A major update to Streamlink.
With this release, we include a Windows binary as well as numerous plugin changes and fixes.
The main features are:
Windows binary (and generation!) thanks to the fabulous work by @beardypig
Multiple plugin fixes
Remove unneeded run-as-root (no more warning you when you run as root, we trust that you know what you're doing)
Fix stream quality naming issue
Beardypig <[email protected]> (13):
fix stream quality naming issue with py2 vs. py3, fixing #89 (#96)
updated connectcast plugin to support the new rtmp streams; fixes #93 (#95)
Fix for erroneous escape coding the livecoding plugin. Fixes #106 (#121)
TVPlayer.com: fix for 400 error, correctly set the platform parameter (#123)
Added a method to automatically determine the encoding when parsing JSON, if no encoding is provided. (#122)
when retry-streams and twitch-disable-hosting arguments are used the stream is retried until a non-hosted stream is found (#125)
plugins.goodgame: Update for API change (#130)
plugins.adultswim: added a new adultswim.com plugin (#139)
plugins.goodgame: restored DDOS protection cookie support (#136)
plugins.younow: update API url (#135)
plugins.euronew: update to support the new site (#141)
plugins.webtv: added a new plugin to support web.tv (#144)
plugins.connectcast: fix regex issue with python 3 (#152)
Brainzyy <[email protected]> (1):
Add piczel.tv plugin (courtesy of @intact) (#114)
Charlie Drage <[email protected]> (1):
Update release scripts
Erk- <[email protected]> (1):
Changed the twitch plugin to use https instead of http as discussed in #103 (#104)
Forrest <[email protected]> (2):
Modify the changelog link (#107)
Update cli to note a few windows issues (#108)
Simon Bernier St-Pierre <[email protected]> (1):
change icon
Simon Bernier St-Pierre <[email protected]> (1):
finish the installer (#98)
Stefan <[email protected]> (1):
Debian packaging base (#80)
Stefan <[email protected]> (1):
remove run-as-root option, reworded warning #85 (#109)
Weslly <[email protected]> (1):
Fixed afreecatv.com url matching (#90)
bastimeyer <[email protected]> (2):
Improve NSIS installer script
Remove shortcut from previous releases on Windows
beardypig <[email protected]> (8):
plugins.cybergame: update to support changes to the live streams on the cybergame.tv website
Use pycryptodome inplace of pyCrypto
Automated build of the Windows NSIS installer
support for relative paths for rtmpdump
makeinstaller: install the streamlinkrc file in to the users %APPDATA% directory
remove references to livestreamer in the win32 config template
stream.rtmpdump: fixed the rtmpdump path issue, introduced in 6bf7fd7
pin requests to <2.12.0 to avoid the strict IDNA2008 validation
ethanhlc <[email protected]> (1):
fixed instance of livestreamer (#99)
intact <[email protected]> (1):
plugins.livestream: Support old player urls
mmetak <[email protected]> (2):
fix vaughnlive.tv info_url (#88)
fix vaughnlive.tv info_url (yet again...) (#143)
skulblakka <[email protected]> (1):
Overworked Plugin for ZDF Mediathek (#154)
sqrt2 <[email protected]> (1):
Fix ORF TVthek plugin (#113)
tam1m <[email protected]> (1):
Fix zdf_mediathek TypeError (#156)
jperkin
pushed a commit
that referenced
this pull request
Apr 20, 2017
This is a relatively minor release of Miller, containing feature
requests and bugfixes while I've been working on the Windows port
(which is nearly complete).
Features:
JSON arrays: as described here, Miller being a tabular data
processor isn't well-position to handle arbitrary JSON. (See
jq for that.) But as of 5.1.0, arrays are converted to maps
with integer keys, which are then at least processable using
Miller. Details are here. The short of it is that you now have
three options for the main mlr executable:
--json-map-arrays-on-input Convert JSON array indices to Miller
map keys. (This is the default.) --json-skip-arrays-on-input
Disregard JSON arrays. --json-fatal-arrays-on-input Raise a fatal
error when JSON arrays are encountered in the input.
This resolves #133.
The new mlr fraction verb makes possible in a few keystrokes
what was only possible before using two-pass DSL logic: here
you can turn numerical values down a column into their
fractional/percentage contribution to column totals, optionally
grouped by other key columns.
The DSL functions strptime and strftime now handle fractional
seconds. For parsing, use %S format as always; for formatting,
there are now %1S through %9S which allow you to configure a
specified number of decimal places. The return value from
strptime is now floating-point, not integer, which is a minor
backward incompatibility not worth labeling this release as
6.0.0. (You can work around this using int(strptime(...)).) The
DSL functions gmt2sec and sec2gmt, which are keystroke-savers
for strptime and strftime, are similarly modified, as is the
sec2gmt verb. This resolves #125.
A few nearly-standalone programs -- which do not have anything
to do with record streams -- are packaged within the Miller.
(For example, hex-dump, unhex, and show-line-endings commands.)
These are described here.
The stats1 and merge-fields verbs now support an antimode
aggregator, in addition to the existing mode aggregator.
The join verb now by default does not require sorted input,
which is the more common use case. (Memory-parsimonious joins
which require sorted input, while no longer the default, are
available using -s.) This another minor backward incompatibility
not worth making a 6.0.0 over. This resolves #134.
mlr nest has a keystroke-saving --evar option for a common use
case, namely, exploding a field by value across records.
Documentation:
The DSL reference now has per-function descriptions.
There is a new feature-counting example in the cookbook.
Bugfixes:
mlr join -j -l was not functioning correctly. This resolves
#136.
JSON escapes on output (\t and so on) were incorrect. This
resolves #135.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
fix build on SmartOS