bioperl: update to 1.007002.

Add p5-Text-Diff as test dependency. 1.7.2 - "Entebbe" [Bugs] * #247 - Omit unnecessary parent_id attribute added by GFF3Loader [nathanweeks] * #245 - Code coverage fixes [zmughal,cjfields] * #237 - Fix warning in Bio::DB::IndexedBase [willmclaren,bosborne] * #238 - Use a Travis cron job for network tests [zmughal,cjfields] * #218 - Bio::DB::Flat::BinarySearch should use _fh() instead of fh() as fh() does not take arguments in [thibauthourlier,bosborne] * #227 - Bio::SeqIO Ignores first line of sequence [VAR121,bosborne] * #223 - Use Travis Perl helper script and enable coverage [zmughal,cjfields] * #222 - Fix test RemoteDB/Taxonomy.t: requires networking [zmughal,cjfields] * #216 - Apply carsonhh's patch (Inline::C fixes) [carsonh,bosborne] * #213 - Support FTS5 in Bio::DB::SeqFeature::Store::DBI::SQLite [nathanweeks,bosborne] * #210 - Sorting qualifiers while write embl files [hdevillers,cjfields] * #209 - Fixed bug in _toDsspKey() [jvolkening,hlapp] [Code changes] * PAML-related code from bioperl and bioperl-run are now in a separate distribution on CPAN [carandraug]
TritonDataCenter · Sep 17, 2017 · 2a4a4dd · 2a4a4dd
1 parent 9e50151
commit 2a4a4dd
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diff --git a/biology/bioperl/Makefile b/biology/bioperl/Makefile
@@ -1,6 +1,6 @@
-# $NetBSD: Makefile,v 1.34 2016/11/10 14:00:17 fhajny Exp $
+# $NetBSD: Makefile,v 1.35 2017/09/17 07:48:11 wiz Exp $
 
-DISTNAME=	BioPerl-1.007001
+DISTNAME=	BioPerl-1.007002
 PKGNAME=	${DISTNAME:tl}
 CATEGORIES=	biology perl5
 MASTER_SITES=	${MASTER_SITE_PERL_CPAN:=Bio/}
@@ -49,6 +49,8 @@ DEPENDS+=	p5-libxml-[0-9]*:../../textproc/p5-libxml
 
 # Suggested
 DEPENDS+=	p5-XML-DOM>=0:../../textproc/p5-XML-DOM
+# TEST_DEPENDS
+BUILD_DEPENDS+=	p5-Text-Diff-[0-9]*:../../textproc/p5-Text-Diff
 
 USE_TOOLS+=		pax
 

diff --git a/biology/bioperl/distinfo b/biology/bioperl/distinfo
@@ -1,6 +1,6 @@
-$NetBSD: distinfo,v 1.8 2016/11/06 08:05:24 wen Exp $
+$NetBSD: distinfo,v 1.9 2017/09/17 07:48:11 wiz Exp $
 
-SHA1 (BioPerl-1.007001.tar.gz) = 13a3e7a30d68ee32d735921668839eda668771f4
-RMD160 (BioPerl-1.007001.tar.gz) = c433044f47f5827f480836329487bf5780c9f480
-SHA512 (BioPerl-1.007001.tar.gz) = 6ab6af9d8fa74a299870273f2843872af099764997aa1b03f88248502f9ed1b74f4f577b67befa1ae8c18ee2640c029a08a403e2dec5b1cdea41f2b86c82c11b
-Size (BioPerl-1.007001.tar.gz) = 12486953 bytes
+SHA1 (BioPerl-1.007002.tar.gz) = 21ab4653fde8cd8520bd7f59f790535f99358eaa
+RMD160 (BioPerl-1.007002.tar.gz) = 6c38bb83464a36546e22629675f881d42dbda4bd
+SHA512 (BioPerl-1.007002.tar.gz) = d89502dd0561a9a969d816e6d66df7f11e57709934095a87027d2637d16a463f0669f7d7392d95a1c8a9db94bfa8d6ec714668a4b9f81fa8b9b512796138d287
+Size (BioPerl-1.007002.tar.gz) = 12362741 bytes