BD2K Center of Excellence for Big Data Computing at UCLA
Alan Kha [email protected]
Hannah Chou [email protected]
Updates the COPaKB database.
usage: DBUpdater [-all <version description> <directory> <instrument>
<enzyme> | -dis | -h | -hpa <file> | -prot <file> | -spec <file>
[module ID] <instrument> <enzyme> | -specdir <directory>
<instrument> <enzyme> | -ver <description>]
Updates the COPaKB database.
-all,--all <version description> <directory> <instrument> <enzyme>
Add/update version, proteins, spectra, and diseases
-dis,--disease Update diseases
-h,--help Show usage
-hpa,--hpa <file> Update HPA proteins from HPA XML file
-prot,--proteins <file>
Update proteins from FASTA file
-spec,--spectra <file> [module ID] <instrument> <enzyme>
Update Spectra from COPA file
-specdir,--spectradirectory <directory> <instrument> <enzyme>
Update Spectra from COPA files in directory
-ver,--version <description>
Add new version
- JUnit tests are not necessarily complete nor usable