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392781 committed Jun 2, 2024
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Expand Up @@ -480,56 +480,7 @@ <h2 is-upgraded>Overview of what we have...</h2>
</table>


</google-codelab-step>

<google-codelab-step label="Distributing Research" duration="10">
<p>- Zenodo</p>
<p>- GitHub</p>
<p> - Mention GitHub Pro for educators </p>
<p> - Spin up the CodeSpaces Demo to test out the tooling</p>
<p> - Mention how to make Podman container files Docker friendly</p>
<p>- Go through process of creating account</p>
<p>- Create zip</p>
<p>- Uploading/managing</p>


</google-codelab-step>

<google-codelab-step label="DEVELOPMENT NOTES" duration="0">
<h2 is-upgraded>Build log</h2>
<p>&#34;docker build&#34;</p>
<p>&#34;docker run&#34;</p>
<p>packages are pulled at build time, so versions are latest if not specified</p>
<h2 is-upgraded>[Teaching] While project builds... (15 minutes)</h2>
<p>- explanation of containerization + remote access</p>
<p> - local -&gt; remote access -&gt; container -&gt; project (diagram)</p>
<p>- R/Python binaries -&gt; installation via Jupyter image (/opt/conda/)</p>
<p>- Show access to terminal on VS Code (inside container)</p>
<p>- Rmd/Qmd/ipynb in VS Code</p>
<p>- Show off web interface like VS Code Notebooks, JupyterLab, RStudio</p>
<h2 is-upgraded>Installing Packages (15 minutes)</h2>
<p>- Installing required packages for the task</p>
<p>- System packages (tree, tmux)</p>
<p>- include packages as comments</p>
<h2 is-upgraded>Reproducibility (20 minutes)</h2>
<p>- Verifying required package versions</p>
<p> - For R we talk about using `remotes` for versioning a package</p>
<p>- Editing Dockerfile to include them</p>
<p>- Rebuilding</p>
<h2 is-upgraded>Common issues with local research computing</h2>
<h2 is-upgraded>Complete task</h2>
<p>- Run some examples</p>
<p>- Generate a PDF?</p>
<p><strong>Instance Deployment</strong></p>
<ul>
<li>Deploy the workshop instances with a generated public key attached to it</li>
<li>Have a excel sheet/document with all the instance names written in and have the workshop attendees choose one and put their name next to the chosen one</li>
<li>Sending out the keys will happen before the actual workshop via email</li>
</ul>


</google-codelab-step>

</google-codelab-step>
</google-codelab>

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