NERPA

1. Reformat antismash5 output to antismash3 format
2. Predict NRPS by 10-aa code
3. Improve Nrpsp_redictor algorithm

Getting Started

git clone https://github.com/Vasiliy566/NERPA.git

Prerequisites

Requirements in requirements.txt file

install with following command:

pip3 install -r requirements.txt

Running the tests

to run test go to tests fiolder:

cd tests

and ryn pytest:

pytest .

Break down into end to end tests

There are two tests: test Piplines tests/Piplines_test.py and test Dictionary handler -> tests/Dictionary_handler.py

And coding style tests

Testt code style according to flake8

if not flake8 installed

pip install flake8 

then run folowwing command in main repo

flake8

Built With

• Pytohn3

Versioning

For the versions available, see the tags on this repository.

Authors

• Isaev Vasily - Coding - Vasiliy566

• Gurevich Alexey - scientific director - Gurevich Alexey

• Ol'ga kunyavskaya - scientific director

See also the list of contributors who participated in this project.

License

This project is licensed under the MIT License - see the LICENSE.md file for details