CPLAT-6431 Add option to skip overlapping patches

[smaifullerton-wk]

Motivation

I'm writing a codemod where it is inevitable that some patches will overlap. I'd like to be able to optionally skip overlapping patches instead of throw an exception when it happens. Also, I'd like to be able to output what was skipped at the end of the code modification for consumers to be able to manually edit should they so desire.

Changes

• Before applying patches, check each one to see if there are any overlaps. If there are, prompt the user to either 1.) skip the patch, or 2.) quit the codemod.
• The skipped patches will be removed from the list of applied patches passed to applyPatchesAndSave. When overlapping patches are passed to applyPatches, the current behavior of throwing an exception will stay the same. It's just that now when running a codemod, we'll always pull them out (or quit early) before giving them to the apply methods.

Release Notes

Review

See CONTRIBUTING.md for more details on review types (+1 / QA +1 / +10) and code review process.

Please review:

QA Checklist

• CI passes

Merge Checklist

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• A Client Platform member has reviewed these changes
• There are no unaddressed comments - this check can be automated if reviewers use the "Request Changes" feature
• For release PRs - Version metadata in Rosie comment is correct

[aviary3-wk]

Security Insights

No security relevant content was detected by automated scans.

Action Items

• Review PR for security impact; comment "security review required" if needed or unsure
• Verify aviary.yaml coverage of security relevant code

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[todbachman-wf]

lgtm

[evanweible-wf]

#nit could put this logic in a local function since it's duplicated here and below

[smaifullerton-wk]

Gonna leave the nit -- I'd prefer not to modify the instance of appliedPatches and skippedPatches within a helper function as there’s already a lot of scope to keep in mind in _runInteractiveCodemod.

[evanweible-wf]

QA +1

• CI passes and verified the overlap prompting locally

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