Merge pull request #153 from eveenhuis/dev/scikit-learn #929
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| # This is a basic workflow to help you get started with Actions | |
| name: CI Unittests | |
| # Controls when the action will run. | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the master branch | |
| push: | |
| branches: | |
| - master | |
| - release | |
| pull_request: | |
| branches: | |
| - master | |
| - release | |
| - update-to-v* | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| defaults: | |
| run: | |
| shell: bash | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| # NOTE: Github actions does not support anchors apparently. Forgive duplication of job | |
| # steps. | |
| jobs: | |
| lint: | |
| runs-on: ubuntu-latest | |
| container: python:3.8 | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| # Cache local python environment artifacts for the current python version | |
| # and poetry lockfile hash. | |
| - uses: actions/cache@v4 | |
| id: env-cache | |
| with: | |
| # Confirmed that the `.local` directory doesn't exist until the | |
| # `pip install --user` is invoked below, so we can be confident that | |
| # only our python stuff is being captured in this cache (intentional). | |
| path: | | |
| ~/.cache/pypoetry/virtualenvs/ | |
| ~/.local | |
| key: python-3.8-${{ hashFiles('poetry.lock') }} | |
| - name: Setup Environment | |
| # See: https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#example-using-a-public-action-in-a-subdirectory | |
| uses: Kitware/SMQTK-Core/.github/actions/python-poetry-setup@master | |
| - name: Lint with Flake8 | |
| run: poetry run flake8 | |
| typecheck: | |
| runs-on: ubuntu-latest | |
| container: python:3.8 | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| # Cache local python environment artifacts for the current python version | |
| # and poetry lockfile hash. | |
| - uses: actions/cache@v4 | |
| id: env-cache | |
| with: | |
| # Confirmed that the `.local` directory doesn't exist until the | |
| # `pip install --user` is invoked below, so we can be confident that | |
| # only our python stuff is being captured in this cache (intentional). | |
| path: | | |
| ~/.cache/pypoetry/virtualenvs/ | |
| ~/.local | |
| key: python-3.8-${{ hashFiles('poetry.lock') }} | |
| - name: Setup Environment | |
| # See: https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#example-using-a-public-action-in-a-subdirectory | |
| uses: Kitware/SMQTK-Core/.github/actions/python-poetry-setup@master | |
| - name: Typecheck with MyPy | |
| run: poetry run mypy | |
| unittests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ["3.8","3.9","3.10","3.11","3.12"] | |
| # Extras for included, optional plugin support (space-separated lists) | |
| opt-extra: [ | |
| "", # no extras | |
| "tools", | |
| ] | |
| # We want all python versions tested even if one of them happens to fail | |
| fail-fast: false | |
| container: python:${{ matrix.python-version }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| # Cache local python environment artifacts for the current python version | |
| # and poetry lockfile hash. | |
| - uses: actions/cache@v4 | |
| id: env-cache | |
| with: | |
| # Confirmed that the `.local` directory doesn't exist until the | |
| # `pip install --user` is invoked below, so we can be confident that | |
| # only our python stuff is being captured in this cache (intentional). | |
| path: | | |
| ~/.cache/pypoetry/virtualenvs/ | |
| ~/.local | |
| key: python-${{ matrix.python-version }}-${{ hashFiles('poetry.lock') }}-${{ matrix.opt-extra }} | |
| restore-keys: | | |
| python-${{ matrix.python-version }}-${{ hashFiles('poetry.lock') }} | |
| - name: Setup Environment | |
| # See: https://docs.github.com/en/actions/reference/workflow-syntax-for-github-actions#example-using-a-public-action-in-a-subdirectory | |
| uses: Kitware/SMQTK-Core/.github/actions/python-poetry-setup@master | |
| - name: Optionally install additional requirements | |
| env: | |
| OPT_EXTRA: ${{ matrix.opt-extra }} | |
| run: | | |
| if [[ -n "$OPT_EXTRA" ]] | |
| then | |
| poetry install --extras "$OPT_EXTRA" | |
| fi | |
| - name: Run Unittests | |
| run: poetry run pytest | |
| - name: CodeCov report submission | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: true | |
| files: coverage.xml | |
| flags: unittests |