AlphaFold3 Result Visualize

Introduction

A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib

What can this do:

• Get a .pml script to help visualize including: (Work in progress)
  • pLDDT
  • Chain
  • Molecule type
  • low PAE contacts
• Get figures about: (Finished)
  • PAE

Usage

python vis_pae.py <alphafold_prediction_directory>

Example