update pak, add pkg-config as osx dependency

adokter · Aug 12, 2024 · 7485c26 · 7485c26
1 parent d1c6a8e
commit 7485c26
Showing 1 changed file with 9 additions and 9 deletions.
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -42,7 +42,7 @@ jobs:
       - name: Install macOS system dependencies
         if: runner.os == 'macOS'
         run: |
-          env HOMEBREW_NO_AUTO_UPDATE=1 brew install hdf5 proj gsl
+          env HOMEBREW_NO_AUTO_UPDATE=1 brew install hdf5 proj gsl pkg-config
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
@@ -52,19 +52,19 @@ jobs:
       - name: Install Linux system dependencies
         if: runner.os == 'Linux'
         run: |
-          pak::local_system_requirements(execute = TRUE)
-          pak::pkg_system_requirements("rcmdcheck", execute = TRUE)
-          pak::pkg_system_requirements("proj4", execute = TRUE) # Using same proj for now...
-          pak::pkg_system_requirements("hdf5r", execute = TRUE) # Using same hdf5 for now...
+          pak::pkg_sysreqs("local::.", dependencies = TRUE)$install_script
+          pak::pkg_sysreqs("rcmdcheck")$install_scripts
+          pak::pkg_sysreqs("proj4")$install_scripts
+          pak::pkg_sysreqs("hdf5r")$install_scripts
         shell: Rscript {0}
       - name: Install dependencies
         run: |
           # set upgrade to FALSE because otherwise several package that are not strict dependencies
           # (like terra) get triggered to build and fail
-          pak::local_install_deps(upgrade = FALSE)
-          pak::pkg_install("rcmdcheck")
-          pak::pkg_install("rmarkdown")
-          pak::pkg_install("markdown")
+          pak::pkg_sysreqs("local::.", dependencies = TRUE, upgrade=FALSE)$install_script
+          pak::pkg_sysreqs("rcmdcheck")$install_scripts
+          pak::pkg_sysreqs("rmarkdown")$install_scripts
+          pak::pkg_sysreqs("markdown")$install_scripts
         shell: Rscript {0}
 
       - uses: r-lib/actions/check-r-package@v2