Discussions

• 2 You must be logged in to vote

  🙏

  why would a known TF and it's motif not show up in our results?

  sid5427 asked Jul 14, 2023 in Q&A · Unanswered

  

  

  0
• 1 You must be logged in to vote

  📣

  SCENIC vs SCENIC+

  bakhtiararya announced Jul 13, 2023 in Announcements

  

  

  6
• 3 You must be logged in to vote

  🙏

  What is the best practice to compare different eRegulons between Ctrl and KO?

  LILI-0000-0002-8173-7367 asked Jul 6, 2023 in Q&A · Unanswered

  

  

  0
• 1 You must be logged in to vote

  🙏

  Difference in regulon output depending on data subset used

  Abigail575 asked Jun 26, 2023 in Q&A · Unanswered

  

  

  0
• 1 You must be logged in to vote

  🙏

  Does scenicplus support analysis on single-cell sequencing data alone?

  aaronwolf1995 asked Jun 21, 2023 in Q&A · Unanswered

  

  

  1
• 2 You must be logged in to vote

  🙏

  Behavior of model evaluation + error while running Pycistarget

  mtrebelo asked May 17, 2023 in Q&A · Unanswered

  

  

  0
• 1 You must be logged in to vote

  💬

  Spatial visualization of enhancer-GRNs in the mammalian brain

  Umaarasu started Jun 8, 2023 in General

  

  

  0
• 1 You must be logged in to vote

  🙏

  Bug when running tutorial

  incredible-maker asked May 30, 2023 in Q&A · Unanswered

  

  

  0
• 2 You must be logged in to vote

  🙏

  Running 'Motif enrichment analysis using pycistarget' with zebrafish data

  mtrebelo asked May 22, 2023 in Q&A · Unanswered

  

  

  0
• 3 You must be logged in to vote

  💬

  Location of ".feather" files for the PBMC tutorial

  vlagani started May 18, 2023 in General

  

  

  0
• 1 You must be logged in to vote

  💬

  Reduce memory load

  fe4960 started May 10, 2023 in General

  

  

  0
• 1 You must be logged in to vote

  🙏

  using TAD coordinates with scenic wrapper function?

  sid5427 asked Apr 13, 2023 in Q&A · Unanswered

  

  

  1
• 1 You must be logged in to vote

  🙏

  Having a problem with export_pseudobulk

  kae-rizz asked Apr 4, 2023 in Q&A · Unanswered

  

  

  1
• 1 You must be logged in to vote

  💬

  Issue: Consistent error with installation (singularity)

  lkearney001 started Mar 8, 2023 in General

  

  

  

  

  5
• 1 You must be logged in to vote

  🙏

  peak to regulons association

  Goultard59 asked Mar 16, 2023 in Q&A · Unanswered

  

  

  2
• 1 You must be logged in to vote

  🙏

  Subsetting SCENIC+ based on sample ID

  Priyadarshini-Rai asked Mar 22, 2023 in Q&A · Unanswered

  

  

  1
• 1 You must be logged in to vote

  💬

  MultiVI and Scenic+ cross-compatibility

  benduc started Mar 22, 2023 in General

  

  

  1
• 1 You must be logged in to vote

  🙏

  What version of Cytoscape is used?

  SidG13 asked Mar 20, 2023 in Q&A · Closed · Unanswered

  

  

  1
• 1 You must be logged in to vote

  💬

  Running pycistarget command aborts aburptly

  Umaarasu started Mar 19, 2023 in General

  

  

  1
• 1 You must be logged in to vote

  💬

  TypeError (unsupported operand type(s) for +:) issue with 'Calculating TF-eGRNs AUC correlation'

  SidG13 started Feb 20, 2023 in General · Closed

  

  

  3
• 1 You must be logged in to vote

  🙏

  No cistromes are found during merge_cistromes

  SidG13 asked Mar 15, 2023 in Q&A · Closed · Unanswered

  

  

  0
• 0 You must be logged in to vote

  🙏

  Error while calculating TF-eGRNs AUC correlation

  Umaarasu asked Feb 10, 2023 in Q&A · Unanswered

  

  

  3
• 1 You must be logged in to vote

  🙏

  Empty DAR dataframes for some cell clusters/types?

  SidG13 asked Mar 14, 2023 in Q&A · Closed · Unanswered

  

  

  0
• 1 You must be logged in to vote

  🙏

  mouse cortex data (GSE210749)

  nouroddinc asked Mar 3, 2023 in Q&A · Unanswered

  

  

  1
• 2 You must be logged in to vote

  🙏

  can I build eGRN with base cistromes

  wangmhan asked Mar 10, 2023 in Q&A · Unanswered

  

  

  1