3.9.4

docs/changelog.md

@@ -1,13 +1,14 @@
-Unreleased
+2024/10/17 Release 3.9.4
 
-- Tutorial for validation FHIR resources with [matchbox](https://ahdis.github.io/matchbox/validation-tutorial/)
-- Gazelle reports: add test to ensure https://gazelle.ihe.net/jira/browse/EHS-831 is fixed
-- Allow validating a resource through the GUI with URL search parameters [#288](https://github.com/ahdis/matchbox/issues/288)
-- Terminology: support CodeableConcept in ValueSet/$validate operation [#291](https://github.com/ahdis/matchbox/issues/291)
-- Upgrade hapifhir org.hl7.fhir.core to 6.3.32
+- Validation: Tutorial for validating FHIR resources with [matchbox](https://ahdis.github.io/matchbox/validation-tutorial/)
+- Validation: add button to copy a direct link to the validation [#296](https://github.com/ahdis/matchbox/issues/296)
+- Validation: support additional validation parameters [#299](https://github.com/ahdis/matchbox/issues/299)
+- Validation: Allow validating a resource through the GUI with URL search parameters [#288](https://github.com/ahdis/matchbox/issues/288)
+- Validation: Terminology: support CodeableConcept in ValueSet/$validate operation [#291](https://github.com/ahdis/matchbox/issues/291)
 - FML: Use FMLParser in StructureMapUtilities and support for identity transform [#289](https://github.com/ahdis/matchbox/issues/289)
 - FML: FML transform performance tuning #264 (via @mrunibe)
-- Validation: add button to copy a direct link to the validation [#296](https://github.com/ahdis/matchbox/issues/296)
+- Gazelle reports: add test to ensure https://gazelle.ihe.net/jira/browse/EHS-831 is fixed
+- Upgrade hapifhir org.hl7.fhir.core to 6.3.32
 
 2024/10/07 Release 3.9.3
 

matchbox-engine/pom.xml

@@ -6,7 +6,7 @@
     <parent>
         <artifactId>matchbox</artifactId>
         <groupId>health.matchbox</groupId>
-        <version>3.9.3</version>
+        <version>3.9.4</version>
     </parent>
 
     <artifactId>matchbox-engine</artifactId>

matchbox-engine/src/main/java/ch/ahdis/matchbox/engine/cli/MatchboxService.java

@@ -30,6 +30,7 @@
 import org.hl7.fhir.r5.renderers.spreadsheets.StructureDefinitionSpreadsheetGenerator;
 import org.hl7.fhir.r5.renderers.spreadsheets.ValueSetSpreadsheetGenerator;
 import org.hl7.fhir.r5.terminologies.CodeSystemUtilities;
+import org.hl7.fhir.r5.terminologies.client.TerminologyClientManager.InternalLogEvent;
 import org.hl7.fhir.utilities.TextFile;
 import org.hl7.fhir.utilities.TimeTracker;
 import org.hl7.fhir.utilities.Utilities;
@@ -148,7 +149,8 @@ public void validateSources(CliContext cliContext, ValidationEngine validator) t
     ValidationOutputRenderer renderer = makeValidationOutputRenderer(cliContext);
     renderer.setOutput(dst);
     renderer.setCrumbTrails(validator.isCrumbTrails());
-
+    renderer.setShowMessageIds(validator.isShowMessageIds());
+
     int ec = 0;
 
     if (r instanceof Bundle) {
@@ -183,6 +185,20 @@ public void validateSources(CliContext cliContext, ValidationEngine validator) t
       TextFile.stringToFile(html, cliContext.getHtmlOutput());
       System.out.println("HTML Summary in " + cliContext.getHtmlOutput());
     }
+
+    if (cliContext.isShowTerminologyRouting()) {
+      System.out.println("");
+      System.out.println("Terminology Routing Dump ---------------------------------------");
+      if (validator.getContext().getTxClientManager().getInternalLog().isEmpty()) {
+        System.out.println("(nothing happened)");            
+      } else {
+        for (InternalLogEvent log : validator.getContext().getTxClientManager().getInternalLog()) {
+          System.out.println(log.getMessage()+" -> "+log.getServer()+" (for VS "+log.getVs()+" with systems '"+log.getSystems()+"', choices = '"+log.getChoices()+"')");
+        }
+      }
+      validator.getContext().getTxClientManager().getInternalLog().clear();
+    }    
+
     System.exit(ec > 0 ? 1 : 0);
   }
 

matchbox-frontend/package.json

@@ -1,6 +1,6 @@
 {
   "name": "matchbox",
-  "version": "3.9.3",
+  "version": "3.9.4",
   "license": "MIT",
   "scripts": {
     "ng": "ng",

matchbox-server/pom.xml

@@ -5,7 +5,7 @@
     <parent>
         <artifactId>matchbox</artifactId>
         <groupId>health.matchbox</groupId>
-        <version>3.9.3</version>
+        <version>3.9.4</version>
     </parent>
 
     <artifactId>matchbox-server</artifactId>

matchbox-server/src/main/java/ch/ahdis/matchbox/CliContext.java

@@ -145,6 +145,15 @@ public CliContext setExtensions(List<String> extensions) {
   @JsonProperty("forPublication")
   private boolean forPublication = false;
 
+  @JsonProperty("showMessageIds")
+  private boolean showMessageIds = false;
+
+  @JsonProperty("showTerminologyRouting")
+  private boolean showTerminologyRouting = false;
+
+  @JsonProperty("clearTxCache")
+  private boolean clearTxCache = false;
+
   @JsonProperty("allowExampleUrls")
   private boolean allowExampleUrls = true;
 
@@ -586,6 +595,30 @@ public void setForPublication(boolean forPublication) {
     this.forPublication = forPublication;
   }
 
+  public boolean isShowMessageIds() {
+    return showMessageIds;
+  }
+
+  public void setShowMessageIds(boolean showMessageIds) {
+    this.showMessageIds = showMessageIds;
+  }
+
+  public boolean isShowTerminologyRouting() {
+    return showTerminologyRouting;
+  }
+
+  public void setShowTerminologyRouting(boolean showTerminologyRouting) {
+    this.showTerminologyRouting = showTerminologyRouting;
+  }
+
+  public boolean isClearTxCache() {
+    return clearTxCache;
+  }
+
+  public void setClearTxCache(boolean clearTxCache) {
+    this.clearTxCache = clearTxCache;
+  }
+
   public boolean isAllowExampleUrls() {
     return allowExampleUrls;
   }
@@ -635,6 +668,9 @@ public boolean equals(final Object o) {
         && securityChecks == that.securityChecks
         && crumbTrails == that.crumbTrails
         && forPublication == that.forPublication
+        && showMessageIds == that.showMessageIds
+        && showTerminologyRouting == that.showTerminologyRouting
+        && clearTxCache == that.clearTxCache
         && allowExampleUrls == that.allowExampleUrls
         && onlyOneEngine == that.onlyOneEngine
         && xVersion == that.xVersion
@@ -677,6 +713,9 @@ public int hashCode() {
         securityChecks,
         crumbTrails,
         forPublication,
+        showMessageIds,
+        showTerminologyRouting,
+        clearTxCache,
         httpReadOnly,
         allowExampleUrls,
         htmlInMarkdownCheck,
@@ -732,6 +771,9 @@ public String toString() {
         ", securityChecks=" + securityChecks +
         ", crumbTrails=" + crumbTrails +
         ", forPublication=" + forPublication +
+        ", showMessageIds=" + showMessageIds +
+        ", showTerminologyRouting=" + showTerminologyRouting +
+        ", clearTxCache=" + clearTxCache +
         ", allowExampleUrls=" + allowExampleUrls +
         ", locale='" + locale + '\'' +
         ", locations=" + locations +
@@ -771,6 +813,9 @@ public void addContextToExtension(final Extension ext) {
 	addExtension(ext, "securityChecks", new BooleanType(this.securityChecks));
 	addExtension(ext, "crumbTrails", new BooleanType(this.crumbTrails));
 	addExtension(ext, "forPublication", new BooleanType(this.forPublication));
+	addExtension(ext, "showMessageIds", new BooleanType(this.showMessageIds));
+	addExtension(ext, "showTerminologyRouting", new BooleanType(this.showTerminologyRouting));
+	addExtension(ext, "clearTxCache", new BooleanType(this.clearTxCache));
 	addExtension(ext, "httpReadOnly", new BooleanType(this.httpReadOnly));
 	addExtension(ext, "allowExampleUrls", new BooleanType(this.allowExampleUrls));
 	addExtension(ext, "txServer", new UriType(this.txServer));

matchbox-server/src/main/java/ch/ahdis/matchbox/MatchboxEngineSupport.java

@@ -498,6 +498,15 @@ private void configureValidationEngine(final MatchboxEngine validator,
 			} catch (final Exception e) {
 				throw new TerminologyServerException("Error while setting the terminology server cache: " + getTxCachePath(cli.getTxServer()), e);
 			}
+
+			try {
+				if (cli.isClearTxCache()) {
+					validator.getContext().getTxCache().clear();
+			  	}
+			} catch (final Exception e) {
+				throw new TerminologyServerException("Error while setting while trying to clear the terminology cache", e);
+			}
+
 		}
 
 		validator.setDebug(cli.isDoDebug());
@@ -531,6 +540,7 @@ private void configureValidationEngine(final MatchboxEngine validator,
 		validator.setWantInvariantInMessage(cli.isWantInvariantsInMessages());
 		validator.setSecurityChecks(cli.isSecurityChecks());
 		validator.setCrumbTrails(cli.isCrumbTrails());
+		validator.setShowMessageIds(cliContext.isShowMessageIds());
 		validator.setForPublication(cli.isForPublication());
 		validator.setShowTimes(true);
 		validator.setAllowExampleUrls(cli.isAllowExampleUrls());

matchbox-server/with-oneengine/application.yaml

@@ -10,6 +10,22 @@ spring:
     max-active: 15
     hikari:
       maximum-pool-size: 10
+hapi:
+  fhir:
+    server_address: http://localhost:8080/matchboxv3/fhir
+    implementationguides:
+      fhir_r4_core:
+        name: hl7.fhir.r4.core
+        version: 4.0.1
+        url: classpath:/hl7.fhir.r4.core.tgz
+      fhir_terminology:
+        name: hl7.terminology
+        version: 5.4.0
+        url: classpath:/hl7.terminology#5.4.0.tgz
+      fhir_extensions:
+        name: hl7.fhir.uv.extensions.r4
+        version: 1.0.0
+        url: classpath:/hl7.fhir.uv.extensions.r4#1.0.0.tgz
 matchbox:
   fhir:
     context:

pom.xml

@@ -9,7 +9,7 @@
 
     <groupId>health.matchbox</groupId>
     <artifactId>matchbox</artifactId>
-    <version>3.9.3</version>
+    <version>3.9.4</version>
     <packaging>pom</packaging>
     <name>matchbox</name>
     <description>An open-source implementation to support testing and implementation of FHIR based solutions and map or