source-S3: Support JSON format (#14213)

* json format support added * json format support added * code formatted * format convertion changed * format naming convertion changed * test cased issue fixed * test case issued resolved * sample file and config added for integration tests * Json doc added Json doc added * update * sample file and config added for integration tests * sample file and config added for integration tests * update jsonl files * review 1 * review 1 * review 1 * pyarrow version upgrade * clean integration test folder architecture * add timestamp record to simple_test.jsonl * fixed integration test and parser review change * simplify table read * doc update * fix specs * user sample files * fix sample files * add newlines at end of files * rename json parser * rename jsonfile to jsonlfile * schema inference added * patch review fix * Update docs/integrations/sources/s3.md doc update Co-authored-by: George Claireaux <[email protected]> * changing the version * changing the title to sync with other type * fix expected csv records * fix expected records for avro and parquet * review fix * fixed master schema handling * remove sample configs * fix expected records * json doc update added more details on json parser * fixed api name * bump version * auto-bump connector version [ci skip] Co-authored-by: alafanechere <[email protected]> Co-authored-by: George Claireaux <[email protected]> Co-authored-by: George Claireaux <[email protected]> Co-authored-by: Octavia Squidington III <[email protected]>
airbytehq · Aug 1, 2022 · 3d49955 · 3d49955
1 parent c5a98f3
commit 3d49955
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diff --git a/airbyte-config/init/src/main/resources/seed/source_definitions.yaml b/airbyte-config/init/src/main/resources/seed/source_definitions.yaml
@@ -833,7 +833,7 @@
 - name: S3
   sourceDefinitionId: 69589781-7828-43c5-9f63-8925b1c1ccc2
   dockerRepository: airbyte/source-s3
-  dockerImageTag: 0.1.17
+  dockerImageTag: 0.1.18
   documentationUrl: https://docs.airbyte.io/integrations/sources/s3
   icon: s3.svg
   sourceType: file

diff --git a/airbyte-config/init/src/main/resources/seed/source_specs.yaml b/airbyte-config/init/src/main/resources/seed/source_specs.yaml
@@ -7892,7 +7892,7 @@
     supportsNormalization: false
     supportsDBT: false
     supported_destination_sync_modes: []
-- dockerImage: "airbyte/source-s3:0.1.17"
+- dockerImage: "airbyte/source-s3:0.1.18"
   spec:
     documentationUrl: "https://docs.airbyte.io/integrations/sources/s3"
     changelogUrl: "https://docs.airbyte.io/integrations/sources/s3"
@@ -8071,6 +8071,51 @@
                 title: "Filetype"
                 const: "avro"
                 type: "string"
+          - title: "Jsonl"
+            description: "This connector uses <a href=\"https://arrow.apache.org/docs/python/json.html\"\
+              \ target=\"_blank\">PyArrow</a> for JSON Lines (jsonl) file parsing."
+            type: "object"
+            properties:
+              filetype:
+                title: "Filetype"
+                const: "jsonl"
+                type: "string"
+              newlines_in_values:
+                title: "Allow newlines in values"
+                description: "Whether newline characters are allowed in JSON values.\
+                  \ Turning this on may affect performance. Leave blank to default\
+                  \ to False."
+                default: false
+                order: 0
+                type: "boolean"
+              unexpected_field_behavior:
+                title: "Unexpected field behavior"
+                description: "How JSON fields outside of explicit_schema (if given)\
+                  \ are treated. Check <a href=\"https://arrow.apache.org/docs/python/generated/pyarrow.json.ParseOptions.html\"\
+                  \ target=\"_blank\">PyArrow documentation</a> for details"
+                default: "infer"
+                examples:
+                - "ignore"
+                - "infer"
+                - "error"
+                order: 1
+                allOf:
+                - title: "UnexpectedFieldBehaviorEnum"
+                  description: "An enumeration."
+                  enum:
+                  - "ignore"
+                  - "infer"
+                  - "error"
+                  type: "string"
+              block_size:
+                title: "Block Size"
+                description: "The chunk size in bytes to process at a time in memory\
+                  \ from each file. If your data is particularly wide and failing\
+                  \ during schema detection, increasing this should solve it. Beware\
+                  \ of raising this too high as you could hit OOM errors."
+                default: 10000
+                order: 2
+                type: "integer"
         schema:
           title: "Manually enforced data schema (Optional)"
           description: "Optionally provide a schema to enforce, as a valid JSON string.\

diff --git a/airbyte-integrations/connectors/source-s3/Dockerfile b/airbyte-integrations/connectors/source-s3/Dockerfile
@@ -17,5 +17,5 @@ COPY source_s3 ./source_s3
 ENV AIRBYTE_ENTRYPOINT "python /airbyte/integration_code/main.py"
 ENTRYPOINT ["python", "/airbyte/integration_code/main.py"]
 
-LABEL io.airbyte.version=0.1.17
+LABEL io.airbyte.version=0.1.18
 LABEL io.airbyte.name=airbyte/source-s3
diff --git a/airbyte-integrations/connectors/source-s3/acceptance-test-config.yml b/airbyte-integrations/connectors/source-s3/acceptance-test-config.yml
@@ -13,6 +13,12 @@ tests:
       status: "succeed"
     # # for Avro format
     - config_path: "secrets/avro_config.json"
+      status:
+        "succeed"
+        # for JSON format
+    - config_path: "secrets/jsonl_config.json"
+      status: "succeed"
+    - config_path: "secrets/jsonl_newlines_config.json"
       status: "succeed"
     # for custom server
     - config_path: "integration_tests/config_minio.json"
@@ -24,65 +30,92 @@ tests:
     - config_path: "secrets/config.json"
     # for Parquet format
     - config_path: "secrets/parquet_config.json"
-    # # for Avro format
+    # for Avro format
     - config_path: "secrets/avro_config.json"
+    # for JSON format
+    - config_path: "secrets/jsonl_config.json"
+    - config_path: "secrets/jsonl_newlines_config.json"
     # for custom server
     - config_path: "integration_tests/config_minio.json"
   basic_read:
     # for CSV format
     - config_path: "secrets/config.json"
       timeout_seconds: 1800
-      configured_catalog_path: "integration_tests/configured_catalog.json"
+      configured_catalog_path: "integration_tests/configured_catalogs/csv.json"
       expect_records:
-        path: "integration_tests/expected_records.txt"
+        path: "integration_tests/expected_records/csv.txt"
     # for Parquet format
     - config_path: "secrets/parquet_config.json"
       timeout_seconds: 1800
-      configured_catalog_path: "integration_tests/parquet_configured_catalog.json"
+      configured_catalog_path: "integration_tests/configured_catalogs/parquet.json"
       expect_records:
-        path: "integration_tests/parquet_expected_records.txt"
+        path: "integration_tests/expected_records/parquet.txt"
       # for Avro format
     - config_path: "secrets/avro_config.json"
       timeout_seconds: 1800
-      configured_catalog_path: "integration_tests/configured_catalog.json"
+      configured_catalog_path: "integration_tests/configured_catalogs/avro.json"
+      expect_records:
+        path: "integration_tests/expected_records/avro.txt"
+    # for JSONL format
+    - config_path: "secrets/jsonl_config.json"
+      timeout_seconds: 1800
+      configured_catalog_path: "integration_tests/configured_catalogs/jsonl.json"
       expect_records:
-        path: "integration_tests/expected_records_avro.txt"
+        path: "integration_tests/expected_records/jsonl.txt"
+    - config_path: "secrets/jsonl_newlines_config.json"
+      timeout_seconds: 1800
+      configured_catalog_path: "integration_tests/configured_catalogs/jsonl.json"
+      expect_records:
+        path: "integration_tests/expected_records/jsonl_newlines.txt"
     # for custom server
     - config_path: "integration_tests/config_minio.json"
       timeout_seconds: 1800
-      configured_catalog_path: "integration_tests/configured_catalog.json"
+      configured_catalog_path: "integration_tests/configured_catalogs/csv.json"
       # expected records contains _ab_source_file_last_modified property which
       # is modified all the time s3 file changed and for custom server it is
       # file creating date and it always new. Uncomment this line when SAT
       # would have ability to ignore specific fields from expected records.
       # expect_records:
-      #  path: "integration_tests/expected_records_custom_server.txt.txt"
+      #  path: "integration_tests/expected_records/custom_server.txt"
   incremental:
     # for CSV format
     - config_path: "secrets/config.json"
       timeout_seconds: 1800
-      configured_catalog_path: "integration_tests/configured_catalog.json"
+      configured_catalog_path: "integration_tests/configured_catalogs/csv.json"
       cursor_paths:
         test: ["_ab_source_file_last_modified"]
       future_state_path: "integration_tests/abnormal_state.json"
     # for Parquet format
     - config_path: "secrets/parquet_config.json"
       timeout_seconds: 1800
-      configured_catalog_path: "integration_tests/parquet_configured_catalog.json"
+      configured_catalog_path: "integration_tests/configured_catalogs/parquet.json"
       cursor_paths:
         test: ["_ab_source_file_last_modified"]
       future_state_path: "integration_tests/abnormal_state.json"
     # for Avro format
     - config_path: "secrets/avro_config.json"
       timeout_seconds: 1800
-      configured_catalog_path: "integration_tests/configured_catalog.json"
+      configured_catalog_path: "integration_tests/configured_catalogs/avro.json"
+      cursor_paths:
+        test: ["_ab_source_file_last_modified"]
+      future_state_path: "integration_tests/abnormal_state.json"
+    # for JSON format
+    - config_path: "secrets/jsonl_config.json"
+      timeout_seconds: 1800
+      configured_catalog_path: "integration_tests/configured_catalogs/jsonl.json"
+      cursor_paths:
+        test: ["_ab_source_file_last_modified"]
+      future_state_path: "integration_tests/abnormal_state.json"
+    - config_path: "secrets/jsonl_newlines_config.json"
+      timeout_seconds: 1800
+      configured_catalog_path: "integration_tests/configured_catalogs/jsonl.json"
       cursor_paths:
         test: ["_ab_source_file_last_modified"]
       future_state_path: "integration_tests/abnormal_state.json"
     # for custom server
     - config_path: "integration_tests/config_minio.json"
       timeout_seconds: 1800
-      configured_catalog_path: "integration_tests/configured_catalog.json"
+      configured_catalog_path: "integration_tests/configured_catalogs/csv.json"
       cursor_paths:
         test: ["_ab_source_file_last_modified"]
       future_state_path: "integration_tests/abnormal_state.json"
@@ -91,16 +124,23 @@ tests:
     # for CSV format
     - config_path: "secrets/config.json"
       timeout_seconds: 1800
-      configured_catalog_path: "integration_tests/configured_catalog.json"
+      configured_catalog_path: "integration_tests/configured_catalogs/csv.json"
     # for Parquet format
     - config_path: "secrets/parquet_config.json"
       timeout_seconds: 1800
-      configured_catalog_path: "integration_tests/parquet_configured_catalog.json"
+      configured_catalog_path: "integration_tests/configured_catalogs/parquet.json"
     # for Avro format
     - config_path: "secrets/avro_config.json"
       timeout_seconds: 1800
-      configured_catalog_path: "integration_tests/configured_catalog.json"
+      configured_catalog_path: "integration_tests/configured_catalogs/avro.json"
+    # for JSON format
+    - config_path: "secrets/jsonl_config.json"
+      timeout_seconds: 1800
+      configured_catalog_path: "integration_tests/configured_catalogs/jsonl.json"
+    - config_path: "secrets/jsonl_newlines_config.json"
+      timeout_seconds: 1800
+      configured_catalog_path: "integration_tests/configured_catalogs/jsonl.json"
     # for custom server
     - config_path: "integration_tests/config_minio.json"
       timeout_seconds: 1800
-      configured_catalog_path: "integration_tests/configured_catalog.json"
+      configured_catalog_path: "integration_tests/configured_catalogs/csv.json"
diff --git a/airbyte-integrations/connectors/source-s3/integration_tests/config_minio.json b/airbyte-integrations/connectors/source-s3/integration_tests/config_minio.json
@@ -0,0 +1,16 @@
+{
+  "dataset": "test",
+  "provider": {
+    "storage": "S3",
+    "bucket": "test-bucket",
+    "aws_access_key_id": "123456",
+    "aws_secret_access_key": "123456key",
+    "path_prefix": "",
+    "endpoint": "http://10.0.3.185:9000"
+  },
+  "format": {
+    "filetype": "csv"
+  },
+  "path_pattern": "*.csv",
+  "schema": "{}"
+}
diff --git a/...integration_tests/configured_catalog.json → ...ation_tests/configured_catalogs/avro.json b/...integration_tests/configured_catalog.json → ...ation_tests/configured_catalogs/avro.json
diff --git a/...ion_tests/parquet_configured_catalog.json → ...ration_tests/configured_catalogs/csv.json b/...ion_tests/parquet_configured_catalog.json → ...ration_tests/configured_catalogs/csv.json
diff --git a/airbyte-integrations/connectors/source-s3/integration_tests/configured_catalogs/jsonl.json b/airbyte-integrations/connectors/source-s3/integration_tests/configured_catalogs/jsonl.json
@@ -0,0 +1,15 @@
+{
+  "streams": [
+    {
+      "stream": {
+        "name": "test",
+        "json_schema": {},
+        "supported_sync_modes": ["full_refresh", "incremental"],
+        "source_defined_cursor": true,
+        "default_cursor_field": ["_ab_source_file_last_modified"]
+      },
+      "sync_mode": "incremental",
+      "destination_sync_mode": "append"
+    }
+  ]
+}
diff --git a/airbyte-integrations/connectors/source-s3/integration_tests/configured_catalogs/parquet.json b/airbyte-integrations/connectors/source-s3/integration_tests/configured_catalogs/parquet.json
@@ -0,0 +1,15 @@
+{
+  "streams": [
+    {
+      "stream": {
+        "name": "test",
+        "json_schema": {},
+        "supported_sync_modes": ["full_refresh", "incremental"],
+        "source_defined_cursor": true,
+        "default_cursor_field": ["_ab_source_file_last_modified"]
+      },
+      "sync_mode": "incremental",
+      "destination_sync_mode": "append"
+    }
+  ]
+}
diff --git a/...tegration_tests/expected_records_avro.txt → ...tegration_tests/expected_records/avro.txt b/...tegration_tests/expected_records_avro.txt → ...tegration_tests/expected_records/avro.txt
@@ -7,4 +7,4 @@
 {"stream": "test", "data": {"id": 6, "fullname_and_valid": {"fullname": "MRNMXFkXZo", "valid": true}, "_ab_additional_properties": {}, "_ab_source_file_last_modified": "2022-05-11T11:54:11+0000", "_ab_source_file_url": "test_sample.avro"}, "emitted_at": 10000000}
 {"stream": "test", "data": {"id": 7, "fullname_and_valid": {"fullname": "MXvEWMgnIr", "valid": true}, "_ab_additional_properties": {}, "_ab_source_file_last_modified": "2022-05-11T11:54:11+0000", "_ab_source_file_url": "test_sample.avro"}, "emitted_at": 10000000}
 {"stream": "test", "data": {"id": 8, "fullname_and_valid": {"fullname": "rqmFGqZqdF", "valid": true}, "_ab_additional_properties": {}, "_ab_source_file_last_modified": "2022-05-11T11:54:11+0000", "_ab_source_file_url": "test_sample.avro"}, "emitted_at": 10000000}
-{"stream": "test", "data": {"id": 9, "fullname_and_valid": {"fullname": "lmPpQTcPFM", "valid": true}, "_ab_additional_properties": {}, "_ab_source_file_last_modified": "2022-05-11T11:54:11+0000", "_ab_source_file_url": "test_sample.avro"}, "emitted_at": 10000000}
+{"stream": "test", "data": {"id": 9, "fullname_and_valid": {"fullname": "lmPpQTcPFM", "valid": true}, "_ab_additional_properties": {}, "_ab_source_file_last_modified": "2022-05-11T11:54:11+0000", "_ab_source_file_url": "test_sample.avro"}, "emitted_at": 10000000}
diff --git a/...s3/integration_tests/expected_records.txt → ...ntegration_tests/expected_records/csv.txt b/...s3/integration_tests/expected_records.txt → ...ntegration_tests/expected_records/csv.txt
@@ -1,4 +1,4 @@
-{"stream": "test", "data": {"id": 1, "name": "PVdhmjb1", "valid": false, "_ab_additional_properties": {}, "_ab_source_file_last_modified": "2021-07-25T15:33:04+0000", "_ab_source_file_url": "simple_test.csv"}, "emitted_at": 1627227468000}
+{"stream": "test", "data": {"id": 1, "name": "PVdhmjb1", "valid": false, "_ab_additional_properties": {}, "_ab_source_file_last_modified": "2021-07-25T15:33:04+0000", "_ab_source_file_url": "simple_test.csv"}, "emitted_at": 162727468000}
 {"stream": "test", "data": {"id": 2, "name": "j4DyXTS7", "valid": true, "_ab_additional_properties": {}, "_ab_source_file_last_modified": "2021-07-25T15:33:04+0000", "_ab_source_file_url": "simple_test.csv"}, "emitted_at": 1627227468000}
 {"stream": "test", "data": {"id": 3, "name": "v0w8fTME", "valid": false, "_ab_additional_properties": {}, "_ab_source_file_last_modified": "2021-07-25T15:33:04+0000", "_ab_source_file_url": "simple_test.csv"}, "emitted_at": 1627227468000}
 {"stream": "test", "data": {"id": 4, "name": "1q6jD8Np", "valid": false, "_ab_additional_properties": {}, "_ab_source_file_last_modified": "2021-07-25T15:33:04+0000", "_ab_source_file_url": "simple_test.csv"}, "emitted_at": 1627227468000}

diff --git a/..._tests/expected_records_custom_server.txt → ..._tests/expected_records/custom_server.txt b/..._tests/expected_records_custom_server.txt → ..._tests/expected_records/custom_server.txt
diff --git a/airbyte-integrations/connectors/source-s3/integration_tests/expected_records/jsonl.txt b/airbyte-integrations/connectors/source-s3/integration_tests/expected_records/jsonl.txt
@@ -0,0 +1,2 @@
+{"stream": "test", "data": {"id": 1, "name": "PVdhmjb1", "valid": false,"value": 1.2, "event_date": "2022-01-01T00:00:00Z", "_ab_additional_properties": {}, "_ab_source_file_last_modified": "2022-07-15T08:31:02+0000", "_ab_source_file_url": "simple_test.jsonl"}, "emitted_at": 162727468000}
+{"stream": "test", "data": {"id": 2, "name": "ABCDEF", "valid": true,"value": 1.0, "event_date": "2023-01-01T00:00:00Z", "_ab_additional_properties": {}, "_ab_source_file_last_modified": "2022-07-15T08:31:02+0000", "_ab_source_file_url": "simple_test.jsonl"}, "emitted_at": 162727468000}
diff --git a/...e-integrations/connectors/source-s3/integration_tests/expected_records/jsonl_newlines.txt b/...e-integrations/connectors/source-s3/integration_tests/expected_records/jsonl_newlines.txt
@@ -0,0 +1,2 @@
+{"stream": "test", "data": {"id": 1, "name": "PVdhmjb1", "valid": false,"value": 1.2, "event_date": "2022-01-01T00:00:00Z", "_ab_additional_properties": {}, "_ab_source_file_last_modified": "2022-07-15T10:07:00+0000", "_ab_source_file_url": "simple_test_newlines.jsonl"}, "emitted_at": 162727468000}
+{"stream": "test", "data": {"id": 2, "name": "ABCDEF", "valid": true,"value": 1.0, "event_date": "2023-01-01T00:00:00Z", "_ab_additional_properties": {}, "_ab_source_file_last_modified": "2022-07-15T10:07:00+0000", "_ab_source_file_url": "simple_test_newlines.jsonl"}, "emitted_at": 162727468000}
diff --git a/...ration_tests/parquet_expected_records.txt → ...ration_tests/expected_records/parquet.txt b/...ration_tests/parquet_expected_records.txt → ...ration_tests/expected_records/parquet.txt
diff --git a/airbyte-integrations/connectors/source-s3/integration_tests/integration_test.py b/airbyte-integrations/connectors/source-s3/integration_tests/integration_test.py
@@ -29,6 +29,8 @@
 
 
 class TestIncrementalFileStreamS3(AbstractTestIncrementalFileStream):
+    region = "eu-west-3"
+
     @property
     def stream_class(self) -> type:
         return IncrementalFileStreamS3
@@ -47,21 +49,20 @@ def provider(self, bucket_name: str) -> Mapping:
         return {"storage": "S3", "bucket": bucket_name}
 
     def _s3_connect(self, credentials: Mapping) -> None:
-        region = "eu-west-3"
         self.s3_client = boto3.client(
             "s3",
             aws_access_key_id=credentials["aws_access_key_id"],
             aws_secret_access_key=credentials["aws_secret_access_key"],
-            region_name=region,
+            region_name=self.region,
         )
         self.s3_resource = boto3.resource(
             "s3", aws_access_key_id=credentials["aws_access_key_id"], aws_secret_access_key=credentials["aws_secret_access_key"]
         )
 
     def cloud_files(self, cloud_bucket_name: str, credentials: Mapping, files_to_upload: List, private: bool = True) -> Iterator[str]:
         self._s3_connect(credentials)
-        region = "eu-west-3"
-        location = {"LocationConstraint": region}
+
+        location = {"LocationConstraint": self.region}
         bucket_name = cloud_bucket_name
 
         print("\n")
@@ -133,5 +134,5 @@ def test_big_file(self, minio_credentials: Dict[str, Any]) -> None:
         minio_credentials["path_pattern"] = "big_files/file.csv"
         minio_credentials["format"]["block_size"] = 5 * 1024**2
         source = SourceS3()
-        catalog = source.read_catalog(HERE / "configured_catalog.json")
+        catalog = source.read_catalog(HERE / "configured_catalogs/csv.json")
         assert self.read_source(minio_credentials, catalog) == expected_count
diff --git a/...ntegrations/connectors/source-s3/integration_tests/sample_files/avrofile/test_sample.avro b/...ntegrations/connectors/source-s3/integration_tests/sample_files/avrofile/test_sample.avro
diff --git a/...-integrations/connectors/source-s3/integration_tests/sample_files/csvfile/simple_test.csv b/...-integrations/connectors/source-s3/integration_tests/sample_files/csvfile/simple_test.csv
@@ -0,0 +1,9 @@
+id,name,valid
+1,PVdhmjb1,False
+2,j4DyXTS7,True
+3,v0w8fTME,False
+4,1q6jD8Np,False
+5,77h4aiMP,True
+6,Le35Wyic,True
+7,xZhh1Kyl,False
+8,M2t286iJ,False
diff --git a/...egrations/connectors/source-s3/integration_tests/sample_files/jsonlfile/simple_test.jsonl b/...egrations/connectors/source-s3/integration_tests/sample_files/jsonlfile/simple_test.jsonl
@@ -0,0 +1,2 @@
+{"id":1,"name":"PVdhmjb1","valid":false, "value": 1.2, "event_date": "2022-01-01T00:00:00Z"}
+{"id":2,"name":"ABCDEF","valid":true, "value": 1, "event_date": "2023-01-01T00:00:00Z"}
diff --git a/.../connectors/source-s3/integration_tests/sample_files/jsonlfile/simple_test_newlines.jsonl b/.../connectors/source-s3/integration_tests/sample_files/jsonlfile/simple_test_newlines.jsonl
@@ -0,0 +1,15 @@
+{
+    "id":1,
+    "name":"PVdhmjb1",
+    "valid":false, 
+    "value": 1.2,
+    "event_date": "2022-01-01T00:00:00Z"
+}
+{
+    "id":2,
+    "name":"ABCDEF",
+    "valid":true, 
+    "value": 1, 
+    "event_date": 
+    "2023-01-01T00:00:00Z"
+}
diff --git a/...tions/connectors/source-s3/integration_tests/sample_files/parquetfile/sample_test.parquet b/...tions/connectors/source-s3/integration_tests/sample_files/parquetfile/sample_test.parquet
diff --git a/airbyte-integrations/connectors/source-s3/integration_tests/sample_files/simple_test.jsonl b/airbyte-integrations/connectors/source-s3/integration_tests/sample_files/simple_test.jsonl
@@ -0,0 +1,8 @@
+{"id":1,"name":"PVdhmjb1","valid":false, "value": 1.2}
+{"id":2,"name":"j4DyXTS7","valid":true, "value": 1.3}
+{"id":3,"name":"v0w8fTME","valid":false, "value": 1.4}
+{"id":4,"name":"1q6jD8Np","valid":false, "value": 1.5}
+{"id":5,"name":"77h4aiMP","valid":true, "value": 1.6}
+{"id":6,"name":"Le35Wyic","valid":true, "value": 1.7}
+{"id":7,"name":"xZhh1Kyl","valid":false, "value": 1.8}
+{"id":8,"name":"M2t286iJ","valid":false, "value": 1.9}