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Update usage.md #1

Merged
merged 1 commit into from
Aug 29, 2024
Merged

Update usage.md #1

merged 1 commit into from
Aug 29, 2024

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alexanderchang1
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Made changes that document usage of WES references from the ASCAT developers and how to avoid a null pointer error

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/sarek branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@alexanderchang1
Update usage.md
8aa4c53 
Made changes that document usage of WES references from the ASCAT developers and how to avoid a null pointer error
@alexanderchang1 alexanderchang1 merged commit 873d9d8 into master Aug 29, 2024
@alexanderchang1 alexanderchang1 deleted the alexanderchang1-patch-WES-ascat branch August 29, 2024 17:30
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