Write tests for core functions #109

Workflow file for this run

.github/workflows/development.yml at 2a8f201

	name: Development Workflow

	on:
	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	jobs:
	build-venv:
	runs-on: ubuntu-22.04
	steps:
	- run: \|
	sudo apt-get upgrade
	sudo apt-get -y install intel-mkl
	- uses: actions/checkout@v4
	- name: Set up Python 3.9
	uses: actions/setup-python@v5
	with:
	python-version: 3.9
	- name: Try restoring cached venv
	id: cached-venv
	uses: actions/cache/restore@v4
	with:
	path: ./venv
	key: venv-${{ runner.os }}-${{ hashFiles('/requirements/base.txt') }}-${{ hashFiles('/**.toml') }}
	- name: Build venv
	run: \|
	python -m pip install --upgrade pip
	python -m venv ./venv
	# with mkl support
	./venv/bin/python -m pip install -r requirements/mkl.txt
	./venv/bin/python -m pip install .[testing]
	if: steps.cached-venv.outputs.cache-hit != 'true'
	- name: Cache venv
	uses: actions/cache/save@v4
	with:
	path: ./venv
	# we can use the key from cached-venv
	key: ${{ steps.cached-venv.outputs.cache-primary-key }}
	if: steps.cached-venv.outputs.cache-hit != 'true'

	build:
	runs-on: ubuntu-22.04
	needs: build-venv
	steps:
	- uses: actions/checkout@v4
	- name: Restoring venv
	uses: actions/cache/restore@v4
	with:
	path: ./venv
	key: venv-${{ runner.os }}-${{ hashFiles('/requirements/base.txt') }}-${{ hashFiles('/**.toml') }}
	- name: Build wheel
	run: \|
	venv/bin/python -m pip install build
	venv/bin/python -m build
	- name: Upload wheel
	uses: actions/upload-artifact@v4
	with:
	name: wheel
	path: dist
	retention-days: 1

	install:
	runs-on: ubuntu-22.04
	needs: build
	steps:
	- uses: actions/checkout@v4
	- uses: actions/cache/restore@v4
	with:
	path: ./venv
	key: venv-${{ runner.os }}-${{ hashFiles('/requirements/base.txt') }}-${{ hashFiles('/**.toml') }}
	- name: Getting build wheel
	uses: actions/download-artifact@v4
	with:
	name: wheel
	path: dist
	- name: Install package
	run: \|
	venv/bin/python -m pip install dist/*.whl
	- name: Cache venv
	uses: actions/cache/save@v4
	with:
	path: ./venv
	key: venv-${{ runner.os }}-${{ hashFiles('venv/**') }}
	if: steps.cached-venv.outputs.cache-hit != 'true'

	test:
	runs-on: ubuntu-latest
	needs: install
	steps:
	- run: \|
	sudo apt-get upgrade
	sudo apt-get -y install intel-mkl
	- uses: actions/checkout@v4
	- name: Set up Python 3.9
	uses: actions/setup-python@v5
	with:
	python-version: 3.9
	# Note: we use cache here since artifacts do not keep permissions
	- name: Getting the venv
	uses: actions/cache/restore@v4
	with:
	path: ./venv
	key: venv-${{ runner.os }}-${{ hashFiles('venv/**') }}
	- name: Tests without memory tracking
	run: \|
	venv/bin/python -m pytest --junitxml=junit/test-results.xml --cov=flowstab --durations=0 -k 'not _memory'
	env:
	COVERAGE_FILE: ".coverage.no_memory"
	- name: Store coverage file
	if: always()
	uses: actions/upload-artifact@v4
	with:
	name: coverage-no_memory
	path: .coverage.no_memory
	include-hidden-files: true

	test-memory:
	runs-on: ubuntu-latest
	needs: install
	steps:
	- run: \|
	sudo apt-get upgrade
	sudo apt-get -y install intel-mkl
	- uses: actions/checkout@v4
	- name: Set up Python 3.9
	uses: actions/setup-python@v5
	with:
	python-version: 3.9
	- name: Build venv
	run: \|
	python -m pip install --upgrade pip
	python -m venv ./venv
	# with mkl support
	./venv/bin/python -m pip install .[testing,mkl]
	# # Note: we use cache here since artifacts do not keep permissions
	# - name: Getting the venv
	# uses: actions/cache/restore@v4
	# with:
	# path: ./venv
	# key: venv-${{ runner.os }}-${{ hashFiles('venv/**') }}
	- name: Tests with memory tracking
	run: \|
	venv/bin/python -m pytest --junitxml=junit/test-results.xml --cov=flowstab --durations=0 --memray --most-allocations=0 -k '_memory'
	env:
	COVERAGE_FILE: ".coverage.memory"
	- name: Store coverage file
	if: always()
	uses: actions/upload-artifact@v4
	with:
	name: coverage-memory
	path: .coverage.memory
	include-hidden-files: true

	coverage:
	name: combine-coverage
	runs-on: ubuntu-22.04
	needs: [test, test-memory]
	if: \|
	always()
	permissions:
	pull-requests: write
	contents: write
	steps:
	- uses: actions/checkout@v4
	- uses: actions/download-artifact@v4
	id: download
	with:
	pattern: coverage-*
	merge-multiple: true
	- name: Coverage comment
	id: coverage_comment
	uses: py-cov-action/python-coverage-comment-action@v3
	with:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	MERGE_COVERAGE_FILES: true

	- name: Store Pull Request comment to be posted
	uses: actions/upload-artifact@v4
	if: steps.coverage_comment.outputs.COMMENT_FILE_WRITTEN == 'true'
	with:
	name: python-coverage-comment-action
	path: python-coverage-comment-action.txt

	lint:
	runs-on: ubuntu-latest
	needs: install
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python 3.9
	uses: actions/setup-python@v5
	with:
	python-version: 3.9
	# Note: we use cache here since artifacts do not keep permissions
	- name: Getting the venv
	uses: actions/cache/restore@v4
	with:
	path: ./venv
	key: venv-${{ runner.os }}-${{ hashFiles('venv/**') }}
	- name: Lint with ruff
	run: \|
	venv/bin/python -m ruff check --select=ALL --output-format=github src/
	continue-on-error: true

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Write tests for core functions #109

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Write tests for core functions #109

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Workflow file for this run