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🧬 🌲 A phylo-pangenomic genome assembler. Genotyping guided by phylogenetic tree pangenomes.

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Installation

Docker local

git clone https://github.com/amkram/panmap

cd panmap && docker build -t panmap .

docker run -it -v .:/panmap panmap bash

The -v argument above mounts the current directory (panmap source) to /panmap in the Docker container (/panmap is the source directory within the container). This means that changes in your local panmap source dir are reflected to the container's panmap source dir. You could also separate them, e.g., -v .:/mine, which links . to /mine in the container, leaving /panmap alone.

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🧬 🌲 A phylo-pangenomic genome assembler. Genotyping guided by phylogenetic tree pangenomes.

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