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Glue endpoint config variable #530

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Glue endpoint config variable #530

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sebpretzer
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Closes: #414

I don't know java, but tried to stay true to the implementation, at least in regards to the commenting.

Open Questions:

  1. I did a very basic test, but I wasn't sure if I should make the test more robust in any regard. Let me know if you think of an edge case I am missing. I could test creating/listing a namespace if that would be helpful to confirm its truly working properly, but that felt like a moto issue, rather than something that should be tested within pyiceberg.
  2. On my end, I am using glue.endpoint for all pytests. I was not sure if within pyiceberg pytests, we wanted to migrate all tests to the endpoint, or continue to use mock_aws(). I started with the least invasive option, but can migrate all other glue tests if that is helpful.
  3. I am not seeing a ton of docs regarding glue config variables, and its is undocumented in the main docs. Within pyiceberg docs, I do see this Glue config, but not sure if this is the best place to put it. Should this get added to the docs, or should it remain undocumented, since its not a commonly used feature?

@Fokko @HonahX both of your thoughts or reviews would be helpful, thanks!

Fokko
Fokko reviewed Mar 18, 2024
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This change looks good to me @sebpretzer Could you also add this property to the docs?

pyiceberg/catalog/glue.py
@@ -105,6 +105,10 @@
GLUE_SKIP_ARCHIVE = "glue.skip-archive"
GLUE_SKIP_ARCHIVE_DEFAULT = True

# Configure an alternative endpoint of the Glue service for GlueCatalog to access.
# This could be used to use GlueCatalog with any glue-compatible metastore service that has a different endpoint
GLUE_CATALOG_ENDPOINT = "glue.endpoint"
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Looks good, same property as in Java: https://github.com/apache/iceberg/blob/f614a3f8b0379188efcc0c38caa486c94c6a52a3/aws/src/main/java/org/apache/iceberg/aws/AwsProperties.java#L103

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Fokko commented Mar 19, 2024

On my end, I am using glue.endpoint for all pytests. I was not sure if within pyiceberg pytests, we wanted to migrate all tests to the endpoint, or continue to use mock_aws(). I started with the least invasive option, but can migrate all other glue tests if that is helpful.

I'm not a big fan of mocking, but I'll defer this question to @HonahX since he's the main author.

I am not seeing a ton of docs regarding glue config variables, and its is undocumented in the main docs. Within pyiceberg docs, I do see this Glue config, but not sure if this is the best place to put it. Should this get added to the docs, or should it remain undocumented, since its not a commonly used feature?

Not documenting features is a mistake, we should document everything as much as possible, without losing the end-user :)

HonahX
HonahX reviewed Mar 20, 2024
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Thanks for adding this configuration @sebpretzer! It looks great!

On my end, I am using glue.endpoint for all pytests. I was not sure if within pyiceberg pytests, we wanted to migrate all tests to the endpoint, or continue to use mock_aws(). I started with the least invasive option, but can migrate all other glue tests if that is helpful.

Currently there are 2 types of tests for glue in pyiceberg. One type is in test_glue.py which use mock_aws() and the other in integration_test_glue.py which asks for developer's own AWS credentials(account) to interact with true AWS Glue services.
The integration_test_glue.py will not run automatically in CI because we do not have a "public" AWS account.

My understanding is that glue.endpoint would allow use to test things in a dev endpoint but this still requires an AWS account. (please correct me if I am wrong about this). So I think it fits more in the integration test category. We could update the integration_test_glue.py to allow developers to specify their test endpoint via an environment variable. WDYT?

Not documenting features is a mistake, we should document everything as much as possible, without losing the end-user :)

+1. I think we can add a table under the glue catalog section to record property names, example values and description, like Rest Catalog

tests/catalog/test_glue.py
test_catalog = GlueCatalog(
catalog_name, **{"s3.endpoint": moto_endpoint_url, "warehouse": f"s3://{BUCKET_NAME}", "glue.endpoint": moto_endpoint_url}
)
assert test_catalog.glue.meta.endpoint_url == moto_endpoint_url
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[Optional]Since we don't call any glue API in this test, shall we just use a fake endpoint url which is more explicit instead of the moto's?
Like

test_endpoint = "this_is_a_test_endpoint"
.....
assert test_catalog.glue.meta.endpoint_url == test_endpoint

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HonahX commented Mar 20, 2024

@sebpretzer FYI, I just found an error in the current glue integration test: #536 . Please feel free to include this fix in this PR if you want to add glue.endpoint to the integration tests

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HonahX commented Jul 10, 2024

Hi @sebpretzer. Gently checking in to see if you have time to update this PR. If not, I’d be happy to help and take over the changes. It will be great to include this in 0.7.0

@HonahX HonahX mentioned this pull request Jul 12, 2024
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Close in favor of #920

@sebpretzer sebpretzer closed this Jul 12, 2024
HonahX added a commit that referenced this pull request Jul 12, 2024
@HonahX @sebpretzer
Glue endpoint config variable, continue #530 (#920)
a3dd531 
Co-authored-by: Seb Pretzer <[email protected]>
felixscherz added a commit to felixscherz/iceberg-python that referenced this pull request Jul 17, 2024
@felixscherz
chore: merge latest commits on main
6ca85ac 
commit 1ed3abd
Author: Sung Yun <[email protected]>
Date:   Wed Jul 17 02:04:52 2024 -0400

    Allow writing `pa.Table` that are either a subset of table schema or in arbitrary order, and support type promotion on write (apache#921)

    * merge

    * thanks @HonahX :)

    Co-authored-by: Honah J. <[email protected]>

    * support promote

    * revert promote

    * use a visitor

    * support promotion on write

    * fix

    * Thank you @Fokko !

    Co-authored-by: Fokko Driesprong <[email protected]>

    * revert

    * add-files promotiontest

    * support promote for add_files

    * add tests for uuid

    * add_files subset schema test

    ---------

    Co-authored-by: Honah J. <[email protected]>
    Co-authored-by: Fokko Driesprong <[email protected]>

commit 0f2e19e
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Mon Jul 15 23:25:08 2024 -0700

    Bump zstandard from 0.22.0 to 0.23.0 (apache#934)

    Bumps [zstandard](https://github.com/indygreg/python-zstandard) from 0.22.0 to 0.23.0.
    - [Release notes](https://github.com/indygreg/python-zstandard/releases)
    - [Changelog](https://github.com/indygreg/python-zstandard/blob/main/docs/news.rst)
    - [Commits](indygreg/python-zstandard@0.22.0...0.23.0)

    ---
    updated-dependencies:
    - dependency-name: zstandard
      dependency-type: direct:production
      update-type: version-update:semver-minor
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit ec73d97
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Mon Jul 15 23:24:47 2024 -0700

    Bump griffe from 0.47.0 to 0.48.0 (apache#933)

    Bumps [griffe](https://github.com/mkdocstrings/griffe) from 0.47.0 to 0.48.0.
    - [Release notes](https://github.com/mkdocstrings/griffe/releases)
    - [Changelog](https://github.com/mkdocstrings/griffe/blob/main/CHANGELOG.md)
    - [Commits](mkdocstrings/griffe@0.47.0...0.48.0)

    ---
    updated-dependencies:
    - dependency-name: griffe
      dependency-type: direct:production
      update-type: version-update:semver-minor
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit d05a423
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Mon Jul 15 23:24:16 2024 -0700

    Bump mkdocs-material from 9.5.28 to 9.5.29 (apache#932)

    Bumps [mkdocs-material](https://github.com/squidfunk/mkdocs-material) from 9.5.28 to 9.5.29.
    - [Release notes](https://github.com/squidfunk/mkdocs-material/releases)
    - [Changelog](https://github.com/squidfunk/mkdocs-material/blob/master/CHANGELOG)
    - [Commits](squidfunk/mkdocs-material@9.5.28...9.5.29)

    ---
    updated-dependencies:
    - dependency-name: mkdocs-material
      dependency-type: direct:production
      update-type: version-update:semver-patch
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit e27cd90
Author: Yair Halevi (Spock) <[email protected]>
Date:   Sun Jul 14 22:11:04 2024 +0300

    Allow empty `names` in mapped field of Name Mapping (apache#927)

    * Remove check_at_least_one field validator

    Iceberg spec permits an emtpy list of names in the default name mapping. check_at_least_one is therefore unnecessary.

    * Remove irrelevant test case

    * Fixing pydantic model

    No longer requiring minimum length of names list to be 1.

    * Added test case for empty names in name mapping

    * Fixed formatting error

commit 3f44dfe
Author: Soumya Ghosh <[email protected]>
Date:   Sun Jul 14 00:35:38 2024 +0530

    Lowercase bool values in table properties (apache#924)

commit b11cdb5
Author: Sung Yun <[email protected]>
Date:   Fri Jul 12 16:45:04 2024 -0400

    Deprecate to_requested_schema (apache#918)

    * deprecate to_requested_schema

    * prep for release

commit a3dd531
Author: Honah J <[email protected]>
Date:   Fri Jul 12 13:14:40 2024 -0700

    Glue endpoint config variable, continue apache#530 (apache#920)

    Co-authored-by: Seb Pretzer <[email protected]>

commit 32e8f88
Author: Sung Yun <[email protected]>
Date:   Fri Jul 12 15:26:00 2024 -0400

    support PyArrow timestamptz with Etc/UTC (apache#910)

    Co-authored-by: Fokko Driesprong <[email protected]>

commit f6d56e9
Author: Sung Yun <[email protected]>
Date:   Fri Jul 12 05:31:06 2024 -0400

    fix invalidation logic (apache#911)

commit 6488ad8
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Thu Jul 11 22:56:48 2024 -0700

    Bump coverage from 7.5.4 to 7.6.0 (apache#917)

    Bumps [coverage](https://github.com/nedbat/coveragepy) from 7.5.4 to 7.6.0.
    - [Release notes](https://github.com/nedbat/coveragepy/releases)
    - [Changelog](https://github.com/nedbat/coveragepy/blob/master/CHANGES.rst)
    - [Commits](nedbat/coveragepy@7.5.4...7.6.0)

    ---
    updated-dependencies:
    - dependency-name: coverage
      dependency-type: direct:development
      update-type: version-update:semver-minor
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit dceedfa
Author: Sung Yun <[email protected]>
Date:   Thu Jul 11 20:32:14 2024 -0400

    Check if schema is compatible in `add_files` API (apache#907)

    Co-authored-by: Fokko Driesprong <[email protected]>

commit aceed2a
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Thu Jul 11 15:52:06 2024 +0200

    Bump mypy-boto3-glue from 1.34.136 to 1.34.143 (apache#912)

    Bumps [mypy-boto3-glue](https://github.com/youtype/mypy_boto3_builder) from 1.34.136 to 1.34.143.
    - [Release notes](https://github.com/youtype/mypy_boto3_builder/releases)
    - [Commits](https://github.com/youtype/mypy_boto3_builder/commits)

    ---
    updated-dependencies:
    - dependency-name: mypy-boto3-glue
      dependency-type: direct:production
      update-type: version-update:semver-patch
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit 1b9b884
Author: Fokko Driesprong <[email protected]>
Date:   Thu Jul 11 12:45:20 2024 +0200

    PyArrow: Don't enforce the schema when reading/writing (apache#902)

    * PyArrow: Don't enforce the schema

    PyIceberg struggled with the different type of arrow, such as
    the `string` and `large_string`. They represent the same, but are
    different under the hood.

    My take is that we should hide these kind of details from the user
    as much as possible. Now we went down the road of passing in the
    Iceberg schema into Arrow, but when doing this, Iceberg has to
    decide if it is a large or non-large type.

    This PR removes passing down the schema in order to let Arrow decide
    unless:

     - The type should be evolved
     - In case of re-ordering, we reorder the original types

    * WIP

    * Reuse Table schema

    * Make linter happy

    * Squash some bugs

    * Thanks Sung!

    Co-authored-by: Sung Yun <[email protected]>

    * Moar code moar bugs

    * Remove the variables wrt file sizes

    * Linting

    * Go with large ones for now

    * Missed one there!

    ---------

    Co-authored-by: Sung Yun <[email protected]>

commit 8f47dfd
Author: Soumya Ghosh <[email protected]>
Date:   Thu Jul 11 11:52:55 2024 +0530

    Move determine_partitions and helper methods to io.pyarrow (apache#906)

commit 5aa451d
Author: Soumya Ghosh <[email protected]>
Date:   Thu Jul 11 07:57:05 2024 +0530

    Rename data_sequence_number to sequence_number in ManifestEntry (apache#900)

commit 77a07c9
Author: Honah J <[email protected]>
Date:   Wed Jul 10 03:56:13 2024 -0700

    Support MergeAppend operations (apache#363)

    * add ListPacker + tests

    * add merge append

    * add merge_append

    * fix snapshot inheritance

    * test manifest file and entries

    * add doc

    * fix lint

    * change test name

    * address review comments

    * rename _MergingSnapshotProducer to _SnapshotProducer

    * fix a serious bug

    * update the doc

    * remove merge_append as public API

    * make default to false

    * add test description

    * fix merge conflict

    * fix snapshot_id issue

commit 66b92ff
Author: Fokko Driesprong <[email protected]>
Date:   Wed Jul 10 10:09:20 2024 +0200

    GCS: Fix incorrect token description (apache#909)

commit c25e080
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Tue Jul 9 20:50:29 2024 -0700

    Bump zipp from 3.17.0 to 3.19.1 (apache#905)

    Bumps [zipp](https://github.com/jaraco/zipp) from 3.17.0 to 3.19.1.
    - [Release notes](https://github.com/jaraco/zipp/releases)
    - [Changelog](https://github.com/jaraco/zipp/blob/main/NEWS.rst)
    - [Commits](jaraco/zipp@v3.17.0...v3.19.1)

    ---
    updated-dependencies:
    - dependency-name: zipp
      dependency-type: indirect
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit 301e336
Author: Sung Yun <[email protected]>
Date:   Tue Jul 9 23:35:11 2024 -0400

    Cast 's', 'ms' and 'ns' PyArrow timestamp to 'us' precision on write (apache#848)

commit 3f574d3
Author: Fokko Driesprong <[email protected]>
Date:   Tue Jul 9 11:36:43 2024 +0200

    Support partial deletes (apache#569)

    * Add option to delete datafiles

    This is done through the Iceberg metadata, resulting
    in efficient deletes if the data is partitioned correctly

    * Pull in main

    * WIP

    * Change DataScan to accept Metadata and io

    For the partial deletes I want to do a scan on in
    memory metadata. Changing this API allows this.

    * fix name-mapping issue

    * WIP

    * WIP

    * Moar tests

    * Oops

    * Cleanup

    * WIP

    * WIP

    * Fix summary generation

    * Last few bits

    * Fix the requirement

    * Make ruff happy

    * Comments, thanks Kevin!

    * Comments

    * Append rather than truncate

    * Fix merge conflicts

    * Make the tests pass

    * Add another test

    * Conflicts

    * Add docs (apache#33)

    * docs

    * docs

    * Add a partitioned overwrite test

    * Fix comment

    * Skip empty manifests

    ---------

    Co-authored-by: HonahX <[email protected]>
    Co-authored-by: Sung Yun <[email protected]>

commit cdc3e54
Author: Fokko Driesprong <[email protected]>
Date:   Tue Jul 9 08:28:27 2024 +0200

    Disallow writing empty Manifest files (apache#876)

    * Disallow writing empty Avro files/blocks

    Raising an exception when doing this might look extreme, but
    there is no real good reason to allow this.

    * Relax the constaints a bit

commit b68e109
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Mon Jul 8 22:16:23 2024 -0700

    Bump fastavro from 1.9.4 to 1.9.5 (apache#904)

    Bumps [fastavro](https://github.com/fastavro/fastavro) from 1.9.4 to 1.9.5.
    - [Release notes](https://github.com/fastavro/fastavro/releases)
    - [Changelog](https://github.com/fastavro/fastavro/blob/master/ChangeLog)
    - [Commits](fastavro/fastavro@1.9.4...1.9.5)

    ---
    updated-dependencies:
    - dependency-name: fastavro
      dependency-type: direct:development
      update-type: version-update:semver-patch
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit 90547bb
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Mon Jul 8 22:15:39 2024 -0700

    Bump moto from 5.0.10 to 5.0.11 (apache#903)

    Bumps [moto](https://github.com/getmoto/moto) from 5.0.10 to 5.0.11.
    - [Release notes](https://github.com/getmoto/moto/releases)
    - [Changelog](https://github.com/getmoto/moto/blob/master/CHANGELOG.md)
    - [Commits](getmoto/moto@5.0.10...5.0.11)

    ---
    updated-dependencies:
    - dependency-name: moto
      dependency-type: direct:development
      update-type: version-update:semver-patch
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

commit 7dff359
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Sun Jul 7 07:50:19 2024 +0200

    Bump tenacity from 8.4.2 to 8.5.0 (apache#898)

commit 4aa469e
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Sat Jul 6 22:30:59 2024 +0200

    Bump certifi from 2024.2.2 to 2024.7.4 (apache#899)

    Bumps [certifi](https://github.com/certifi/python-certifi) from 2024.2.2 to 2024.7.4.
    - [Commits](certifi/python-certifi@2024.02.02...2024.07.04)

    ---
    updated-dependencies:
    - dependency-name: certifi
      dependency-type: indirect
    ...

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commit aa7ad78
Author: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Date:   Sat Jul 6 20:37:51 2024 +0200

    Bump deptry from 0.16.1 to 0.16.2 (apache#897)

    Bumps [deptry](https://github.com/fpgmaas/deptry) from 0.16.1 to 0.16.2.
    - [Release notes](https://github.com/fpgmaas/deptry/releases)
    - [Changelog](https://github.com/fpgmaas/deptry/blob/main/CHANGELOG.md)
    - [Commits](fpgmaas/deptry@0.16.1...0.16.2)

    ---
    updated-dependencies:
    - dependency-name: deptry
      dependency-type: direct:development
      update-type: version-update:semver-patch
    ...

    Signed-off-by: dependabot[bot] <[email protected]>
    Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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glue.endpoint config implementation?
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@sebpretzer @Fokko @HonahX