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[SPARK-35171][R] Declare the markdown package as a dependency of the SparkR package #32270

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What changes were proposed in this pull request?

Declare the markdown package as a dependency of the SparkR package

Why are the changes needed?

If we didn't install pandoc locally, running make-distribution.sh will fail with the following message:

— re-building ‘sparkr-vignettes.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Error: processing vignette 'sparkr-vignettes.Rmd' failed with diagnostics:
The 'markdown' package should be declared as a dependency of the 'SparkR' package (e.g., in the 'Suggests' field of DESCRIPTION), because the latter contains vignette(s) built with the 'markdown' package. Please see https://github.com/yihui/knitr/issues/1864 for more information.
— failed re-building ‘sparkr-vignettes.Rmd’

Does this PR introduce any user-facing change?

Yes. Workaround for R packaging.

How was this patch tested?

Manually test. After the fix, the command sh dev/make-distribution.sh -Psparkr -Phadoop-2.7 -Phive -Phive-thriftserver -Pyarn in the environment without pandoc will pass.

@github-actions github-actions bot added the R label Apr 21, 2021
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SparkQA commented Apr 21, 2021

Test build #137722 has finished for PR 32270 at commit ad9a572.

  • This patch passes all tests.
  • This patch merges cleanly.
  • This patch adds no public classes.

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SparkQA commented Apr 21, 2021

Kubernetes integration test starting
URL: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder-K8s/42249/

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SparkQA commented Apr 21, 2021

Kubernetes integration test status failure
URL: https://amplab.cs.berkeley.edu/jenkins/job/SparkPullRequestBuilder-K8s/42249/

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cc @HyukjinKwon

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Merged to master.

@xuanyuanking xuanyuanking deleted the SPARK-35171 branch April 21, 2021 12:04
@dongjoon-hyun
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Thank you, @xuanyuanking and @HyukjinKwon .
During testing branch-3.1, I saw the Error message.
I'll backport this to branch-3.1.

dongjoon-hyun pushed a commit that referenced this pull request May 23, 2021
…SparkR package

### What changes were proposed in this pull request?
Declare the markdown package as a dependency of the SparkR package

### Why are the changes needed?
If we didn't install pandoc locally, running make-distribution.sh will fail with the following message:
```
— re-building ‘sparkr-vignettes.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Error: processing vignette 'sparkr-vignettes.Rmd' failed with diagnostics:
The 'markdown' package should be declared as a dependency of the 'SparkR' package (e.g., in the 'Suggests' field of DESCRIPTION), because the latter contains vignette(s) built with the 'markdown' package. Please see yihui/knitr#1864 for more information.
— failed re-building ‘sparkr-vignettes.Rmd’
```

### Does this PR introduce _any_ user-facing change?
Yes. Workaround for R packaging.

### How was this patch tested?
Manually test. After the fix, the command `sh dev/make-distribution.sh -Psparkr -Phadoop-2.7 -Phive -Phive-thriftserver -Pyarn` in the environment without pandoc will pass.

Closes #32270 from xuanyuanking/SPARK-35171.

Authored-by: Yuanjian Li <[email protected]>
Signed-off-by: HyukjinKwon <[email protected]>
(cherry picked from commit 8e9e700)
Signed-off-by: Dongjoon Hyun <[email protected]>
@HyukjinKwon
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👍

flyrain pushed a commit to flyrain/spark that referenced this pull request Sep 21, 2021
…SparkR package

### What changes were proposed in this pull request?
Declare the markdown package as a dependency of the SparkR package

### Why are the changes needed?
If we didn't install pandoc locally, running make-distribution.sh will fail with the following message:
```
— re-building ‘sparkr-vignettes.Rmd’ using rmarkdown
Warning in engine$weave(file, quiet = quiet, encoding = enc) :
Pandoc (>= 1.12.3) not available. Falling back to R Markdown v1.
Error: processing vignette 'sparkr-vignettes.Rmd' failed with diagnostics:
The 'markdown' package should be declared as a dependency of the 'SparkR' package (e.g., in the 'Suggests' field of DESCRIPTION), because the latter contains vignette(s) built with the 'markdown' package. Please see yihui/knitr#1864 for more information.
— failed re-building ‘sparkr-vignettes.Rmd’
```

### Does this PR introduce _any_ user-facing change?
Yes. Workaround for R packaging.

### How was this patch tested?
Manually test. After the fix, the command `sh dev/make-distribution.sh -Psparkr -Phadoop-2.7 -Phive -Phive-thriftserver -Pyarn` in the environment without pandoc will pass.

Closes apache#32270 from xuanyuanking/SPARK-35171.

Authored-by: Yuanjian Li <[email protected]>
Signed-off-by: HyukjinKwon <[email protected]>
(cherry picked from commit 8e9e700)
Signed-off-by: Dongjoon Hyun <[email protected]>
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4 participants