Update BGC and Icepack interfaces (#968) #310
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: GHActions | |
| # This workflow is triggered on pushes, pull-requeust, and releases | |
| # ghactions* branch names will trigger this to support development testing | |
| # To Do: get it working with bash and ubuntu | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - 'CICE*' | |
| - 'ghactions*' | |
| pull_request: | |
| release: | |
| types: | |
| - created | |
| defaults: | |
| run: | |
| shell: /bin/csh -e {0} | |
| jobs: | |
| build: | |
| name: "CICETesting" | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| # os: [macos-latest, ubuntu-latest] | |
| os: [macos-latest] | |
| # os: [macos-13] | |
| # os: [ubuntu-latest] | |
| include: | |
| # - os: macos-13 | |
| # envdef: macos | |
| # minicond: Miniconda3-latest-MacOSX-x86_64.sh | |
| - os: macos-latest | |
| envdef: macos | |
| minicond: Miniconda3-latest-MacOSX-x86_64.sh | |
| # - os: ubuntu-latest | |
| # envdef: linux | |
| # minicond: Miniconda3-latest-Linux-x86_64.sh | |
| steps: | |
| - name: reset macos toolchain to commandlinetools | |
| shell: /bin/bash {0} | |
| if: contains( matrix.envdef, 'macos') | |
| run: | | |
| sudo xcode-select -r | |
| sudo xcode-select -s /Library/Developer/CommandLineTools | |
| echo "xcrun --show-sdk-path: $(xcrun --show-sdk-path)" | |
| echo "xcode-select -p: $(xcode-select -p)" | |
| - name: system info | |
| shell: /bin/bash {0} | |
| run: | | |
| type wget | |
| type curl | |
| type csh | |
| echo "readlink \$(which csh): $(python -c 'import os, sys; print(os.path.realpath(sys.argv[1]))' $(which csh))" | |
| echo "csh --version: $(csh --version)" | |
| echo "uname -a: $(uname -a)" | |
| echo "sw_vers: $(sw_vers)" | |
| echo "HOME: $HOME" | |
| echo "GITHUB_WORKSPACE: $GITHUB_WORKSPACE" | |
| echo "OS: ${{ matrix.os }}" | |
| echo "ENVDEF: ${{ matrix.envdef }}" | |
| echo "MINICOND: ${{ matrix.minicond }}" | |
| - name : install miniconda | |
| shell: /bin/bash {0} | |
| run: | | |
| wget https://repo.anaconda.com/miniconda/${{ matrix.minicond }} -O ~/miniconda.sh | |
| bash ~/miniconda.sh -b -p $HOME/miniconda | |
| - name: clone | |
| uses: actions/checkout@v2 | |
| with: | |
| submodules: 'recursive' | |
| - name: link | |
| run: | | |
| ln -s ${GITHUB_WORKSPACE}/../CICE ${HOME}/cice | |
| # ls -al ${HOME}/ | |
| # ls -al ${GITHUB_WORKSPACE}/ | |
| - name: check for tabs | |
| run: | | |
| cd $HOME/cice/cicecore | |
| set cnt = 0 | |
| set ffiles = `find -P . -iname "*.f*"` | |
| set cfiles = `find -P . -iname "*.c*"` | |
| foreach file ($ffiles $cfiles) | |
| set fcnt = `sed -n '/\t/p' $file | wc -l` | |
| @ cnt = $cnt + $fcnt | |
| if ($fcnt > 0) then | |
| echo "TAB found: $fcnt $file" | |
| endif | |
| end | |
| exit $cnt | |
| - name: setup conda env | |
| shell: /bin/bash {0} | |
| run: | | |
| cd $HOME && mkdir -p cice-dirs/runs cice-dirs/baseline cice-dirs/input | |
| source $HOME/miniconda/bin/activate | |
| conda init tcsh | |
| cd $HOME/cice | |
| conda env create -f configuration/scripts/machines/environment.yml | |
| - name: check conda env | |
| run: | | |
| conda activate cice && which clang && which gfortran && which mpicc && which mpifort && which make | |
| clang --version | |
| gfortran --version | |
| mpifort --version | |
| mpicc --version | |
| make --version | |
| # echo "mpifort -v:" | |
| # mpifort -v | |
| # echo "mpifort --showme:compile:" | |
| # mpifort --showme:compile | |
| # echo "mpifort --showme:link:" | |
| # mpifort --showme:link | |
| # echo "mpifort --showme:command:" | |
| # mpifort --showme:command | |
| # echo "mpifort --showme:libdirs:" | |
| # mpifort --showme:libdirs | |
| # echo "mpifort --showme:libs:" | |
| # mpifort --showme:libs | |
| # echo "mpifort --showme:incdirs:" | |
| # mpifort --showme:incdirs | |
| - name: check setup case | |
| run: | | |
| cd $HOME/cice | |
| ./cice.setup -m conda -e ${{ matrix.envdef }} -c case0 --pes 1x1 -s diag1 | |
| - name: check setup test | |
| run: | | |
| cd $HOME/cice | |
| ./cice.setup -m conda -e ${{ matrix.envdef }} --test smoke --testid c0 | |
| - name: run hello world unit test | |
| run: | | |
| cd $HOME/cice | |
| ./cice.setup -m conda -e ${{ matrix.envdef }} --test unittest --pes 2x1 -s helloworld --testid hw01 | |
| cd *helloworld*hw01 | |
| ./cice.build | |
| ./cice.run | |
| - name: check cice compile | |
| run: | | |
| cd $HOME/cice | |
| ./cice.setup -m conda -e ${{ matrix.envdef }} -c case1 --pes 2x2 -s diag1 | |
| cd case1 | |
| ./cice.build | |
| - name: download input data | |
| run: | | |
| cd $HOME/cice-dirs/input | |
| wget --progress=dot:giga https://zenodo.org/record/3728358/files/CICE_data_gx3_grid_ic-20200320.tar.gz && tar xvfz CICE_data_gx3_grid_ic-20200320.tar.gz | |
| wget --progress=dot:giga https://zenodo.org/records/10419929/files/CICE_data_gx3_forcing_JRA55_200501_20231220.tar.gz && tar xvfz CICE_data_gx3_forcing_JRA55_200501_20231220.tar.gz | |
| pwd | |
| cd CICE_data/forcing/gx3/JRA55/8XDAILY | |
| ln -s JRA55_gx3_03hr_forcing_200501.nc JRA55_gx3_03hr_forcing_2005.nc | |
| cd $HOME/cice-dirs/input | |
| ls -alR | |
| # - name: run case | |
| # run: | | |
| # cd $HOME/cice | |
| # cd case1 | |
| # ./cice.run | |
| - name: run suite | |
| run: | | |
| cd $HOME/cice | |
| ./cice.setup -m conda -e ${{ matrix.envdef }} --suite travis_suite --testid ${{ matrix.os }} | |
| - name: write output | |
| run: | | |
| cd $HOME/cice | |
| ./.github/workflows/write_logfiles.csh | |
| cd testsuite.${{ matrix.os }} | |
| ./results.csh | |
| - name: successful run | |
| if: ${{ success() }} | |
| run: | | |
| echo "${{ job.name }} PASSED" | |
| - name: trap failure | |
| if: ${{ failure() }} | |
| run: | | |
| echo "${{ job.name }} FAILED" | |
| exit 99 |