[TEST] AIBL-to-BIDS : add unit tests to functions related to creating sessions.tsv files #1081
Workflow file for this run
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name: Instantiation Tests | |
on: | |
push: | |
branches: ["dev", "maint-*"] | |
pull_request: | |
branches: ["dev", "maint-*"] | |
permissions: | |
contents: read | |
concurrency: | |
group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}' | |
cancel-in-progress: true | |
jobs: | |
test-instantiation-MacOS: | |
runs-on: | |
- self-hosted | |
- macOS | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Run instantiation tests | |
run: | | |
make env.conda | |
source ~/miniconda3/etc/profile.d/conda.sh | |
conda activate "${{ github.workspace }}"/env | |
source "$(brew --prefix)/opt/modules/init/bash" | |
module load clinica.all | |
make install | |
cd test | |
poetry run pytest --verbose \ | |
--working_directory=/Volumes/data/working_dir_mac \ | |
--input_data_directory=/Volumes/data_ci \ | |
--basetemp=/Volumes/data/tmp \ | |
--junitxml=./test-reports/instantiation_mac.xml \ | |
--disable-warnings \ | |
./instantiation/ | |
test-instantiation-Linux: | |
runs-on: | |
- self-hosted | |
- Linux | |
- test-runner | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Run instantiation tests | |
run: | | |
make env.conda | |
source /builds/miniconda/etc/profile.d/conda.sh | |
conda activate "${{ github.workspace }}"/env | |
source /usr/local/Modules/init/profile.sh | |
module load clinica.all | |
make install | |
cd test | |
poetry run pytest --verbose \ | |
--working_directory=/mnt/data/ci/working_dir_linux \ | |
--input_data_directory=/mnt/data_ci \ | |
--basetemp=/mnt/data/ci/tmp \ | |
--junitxml=./test-reports/instantiation_linux.xml \ | |
--disable-warnings \ | |
./instantiation/ |