[ENH] ADNI-to-BIDS converts only subjects in the provided ADNI directory if no subjects list is given #26
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Build and Deloy Documentation | |
| on: | |
| push: | |
| branches: ["dev", "maint-*"] | |
| pull_request: | |
| branches: ["dev", "maint-*"] | |
| permissions: | |
| contents: read | |
| concurrency: | |
| group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}' | |
| cancel-in-progress: true | |
| env: | |
| POETRY_VERSION: '1.6.1' | |
| PYTHON_VERSION: '3.10' | |
| jobs: | |
| build-and-deploy-doc: | |
| runs-on: | |
| - self-hosted | |
| - Linux | |
| - doc-runner | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: snok/install-poetry@v1 | |
| with: | |
| version: ${{ env.POETRY_VERSION }} | |
| virtualenvs-create: false | |
| - name: Build documentation | |
| run: | | |
| make env.conda | |
| source ~/miniconda3/etc/profile.d/conda.sh | |
| conda activate "${{ github.workspace }}"/env | |
| make doc | |
| - name: Deploy documentation | |
| run: | | |
| if [[ -z "${{ github.event.number }}" ]]; | |
| then | |
| BRANCH_NAME="${{ github.ref_name }}" | |
| else | |
| BRANCH_NAME="PR-${{ github.event.number }}" | |
| fi | |
| echo $BRANCH_NAME | |
| mv site "${BRANCH_NAME}" | |
| ls "${BRANCH_NAME}" | |
| scp -r "${BRANCH_NAME}" "aramislab:/srv/local/clinica/docs/public/${BRANCH_NAME}" | |