[FIX] Fix wrong preprocessing sequence in adni-to-bids FDG PET Uniform (

#1159)

* Wrong Processed sequence --> Results: Impossible to make bids of FDG PET Uniform (does not find it)

* Linter exception

* Linter word-list exception update

* Update clinica/iotools/converters/adni_to_bids/adni_modalities/adni_fdg_pet.py

Co-authored-by: Gensollen <[email protected]>

* Update pyproject.toml

Co-authored-by: Gensollen <[email protected]>

* Update clinica/iotools/converters/adni_to_bids/adni_modalities/adni_fdg_pet.py

Co-authored-by: Gensollen <[email protected]>

* Update clinica/iotools/converters/adni_to_bids/adni_modalities/adni_fdg_pet.py

* try using a text file for ignoring words

* remove useless codespell:ignore

* sort ignore words

---------

Co-authored-by: Gensollen <[email protected]>

clinica/iotools/converters/adni_to_bids/adni_modalities/adni_fdg_pet.py

@@ -18,8 +18,8 @@ class ADNIPreprocessingStep(Enum):
     STEP1 = "Co-registered Dynamic"
     STEP2 = "Co-registered, Averaged"
     STEP3 = "Coreg, Avg, Standardized Image and Voxel Size"
-    STEP4_8MM = "Coreg, Avg, Std Img and Voxel Size, Uniform Resolution"
-    STEP4_6MM = "Coreg, Avg, Std Img and Voxel Size, Uniform 6mm Res"
+    STEP4_8MM = "Coreg, Avg, Std Img and Vox Siz, Uniform Resolution"
+    STEP4_6MM = "Coreg, Avg, Std Img and Vox Siz, Uniform 6mm Res"
 
     @classmethod
     def from_step_value(cls, step_value: int):

ignore_words.txt

@@ -0,0 +1,8 @@
+artic
+commun
+fo
+fwe
+nd
+siz
+te
+vox

pyproject.toml

@@ -108,6 +108,6 @@ line-ending = "auto"
 
 [tool.codespell]
 summary = ''
-skip = ".git,LICENSE.txt,*.m"
+skip = ".git,LICENSE.txt,ignore_words.txt,*.m"
 quiet-level = 3
-ignore-words-list = "nd,fwe,commun,fo,te,artic"
+ignore-words = "ignore_words.txt"