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DGL Refactor Updates (#31)
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* initial commit

* bump

* cleanup workflows

* Update build.yml

* Update build.yml

* parameter renaming, new `use_async` param

* update release action
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aMahanna authored Oct 26, 2023
1 parent b470e85 commit 2178ac0
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Showing 7 changed files with 759 additions and 456 deletions.
2 changes: 1 addition & 1 deletion .github/workflows/analyze.yml
Original file line number Diff line number Diff line change
Expand Up @@ -37,7 +37,7 @@ jobs:

steps:
- name: Checkout repository
uses: actions/checkout@v2
uses: actions/checkout@v4

# Initializes the CodeQL tools for scanning.
- name: Initialize CodeQL
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24 changes: 18 additions & 6 deletions .github/workflows/build.yml
Original file line number Diff line number Diff line change
@@ -1,9 +1,8 @@
name: build
on:
workflow_dispatch:
push:
branches: [ master ]
pull_request:
push:
branches: [ master ]
env:
PACKAGE_DIR: adbdgl_adapter
Expand All @@ -16,31 +15,44 @@ jobs:
python: ["3.8", "3.9", "3.10", "3.11"]
name: Python ${{ matrix.python }}
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4

- name: Setup Python ${{ matrix.python }}
uses: actions/setup-python@v2
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python }}
cache: 'pip'
cache-dependency-path: setup.py

- name: Set up ArangoDB Instance via Docker
run: docker create --name adb -p 8529:8529 -e ARANGO_ROOT_PASSWORD= arangodb/arangodb:3.9.1
run: docker create --name adb -p 8529:8529 -e ARANGO_ROOT_PASSWORD= arangodb/arangodb

- name: Start ArangoDB Instance
run: docker start adb

- name: Setup pip
run: python -m pip install --upgrade pip setuptools wheel

- name: Install packages
run: pip install .[dev]

- name: Run black
run: black --check --verbose --diff --color ${{env.PACKAGE_DIR}} ${{env.TESTS_DIR}}

- name: Run flake8
run: flake8 ${{env.PACKAGE_DIR}} ${{env.TESTS_DIR}}

- name: Run isort
run: isort --check --profile=black ${{env.PACKAGE_DIR}} ${{env.TESTS_DIR}}

- name: Run mypy
run: mypy ${{env.PACKAGE_DIR}} ${{env.TESTS_DIR}}

- name: Run pytest
run: pytest --cov=${{env.PACKAGE_DIR}} --cov-report xml --cov-report term-missing -v --color=yes --no-cov-on-fail --code-highlight=yes

- name: Publish to coveralls.io
if: matrix.python == '3.8'
if: matrix.python == '3.10'
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run: coveralls --service=github
70 changes: 14 additions & 56 deletions .github/workflows/release.yml
Original file line number Diff line number Diff line change
Expand Up @@ -3,76 +3,34 @@ on:
workflow_dispatch:
release:
types: [published]
env:
PACKAGE_DIR: adbdgl_adapter
TESTS_DIR: tests
jobs:
build:
runs-on: ubuntu-latest
strategy:
matrix:
python: ["3.8", "3.9", "3.10", "3.11"]
name: Python ${{ matrix.python }}
steps:
- uses: actions/checkout@v2
- name: Setup Python ${{ matrix.python }}
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python }}
- name: Set up ArangoDB Instance via Docker
run: docker create --name adb -p 8529:8529 -e ARANGO_ROOT_PASSWORD= arangodb/arangodb:3.9.1
- name: Start ArangoDB Instance
run: docker start adb
- name: Setup pip
run: python -m pip install --upgrade pip setuptools wheel
- name: Install packages
run: pip install .[dev]
- name: Run black
run: black --check --verbose --diff --color ${{env.PACKAGE_DIR}} ${{env.TESTS_DIR}}
- name: Run flake8
run: flake8 ${{env.PACKAGE_DIR}} ${{env.TESTS_DIR}}
- name: Run isort
run: isort --check --profile=black ${{env.PACKAGE_DIR}} ${{env.TESTS_DIR}}
- name: Run mypy
run: mypy ${{env.PACKAGE_DIR}} ${{env.TESTS_DIR}}
- name: Run pytest
run: pytest --cov=${{env.PACKAGE_DIR}} --cov-report xml --cov-report term-missing -v --color=yes --no-cov-on-fail --code-highlight=yes
- name: Publish to coveralls.io
if: matrix.python == '3.8'
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run: coveralls --service=github

release:
needs: build
runs-on: ubuntu-latest
name: Release package
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4

- name: Fetch complete history for all tags and branches
run: git fetch --prune --unshallow

- name: Setup python
uses: actions/setup-python@v2
- name: Setup Python
uses: actions/setup-python@v4
with:
python-version: "3.8"
python-version: "3.10"

- name: Install release packages
run: pip install setuptools wheel twine setuptools-scm[toml]

- name: Install dependencies
run: pip install .[dev]

- name: Build distribution
run: python setup.py sdist bdist_wheel

- name: Publish to PyPI Test
- name: Publish to Test PyPi
env:
TWINE_USERNAME: __token__
TWINE_PASSWORD: ${{ secrets.TWINE_PASSWORD_TEST }}
run: twine upload --repository testpypi dist/* #--skip-existing
- name: Publish to PyPI

- name: Publish to PyPi
env:
TWINE_USERNAME: __token__
TWINE_PASSWORD: ${{ secrets.TWINE_PASSWORD }}
Expand All @@ -83,7 +41,7 @@ jobs:
runs-on: ubuntu-latest
name: Update Changelog
steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v4
with:
fetch-depth: 0

Expand All @@ -95,10 +53,10 @@ jobs:
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

- name: Setup python
uses: actions/setup-python@v2
- name: Setup Python
uses: actions/setup-python@v4
with:
python-version: "3.8"
python-version: "3.10"

- name: Install release packages
run: pip install wheel gitchangelog pystache
Expand All @@ -110,12 +68,12 @@ jobs:
run: gitchangelog ${{env.VERSION}} > CHANGELOG.md

- name: Make commit for auto-generated changelog
uses: EndBug/add-and-commit@v7
uses: EndBug/add-and-commit@v9
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
with:
add: "CHANGELOG.md"
branch: actions/changelog
new_branch: actions/changelog
message: "!gitchangelog"

- name: Create pull request for the auto generated changelog
Expand All @@ -128,4 +86,4 @@ jobs:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

- name: Alert developer of open PR
run: echo "Changelog $PR_URL is ready to be merged by developer."
run: echo "Changelog $PR_URL is ready to be merged by developer."
10 changes: 6 additions & 4 deletions adbdgl_adapter/abc.py
Original file line number Diff line number Diff line change
Expand Up @@ -15,16 +15,18 @@ def __init__(self) -> None:
raise NotImplementedError # pragma: no cover

def arangodb_to_dgl(
self, name: str, metagraph: ADBMetagraph, **query_options: Any
self, name: str, metagraph: ADBMetagraph, **adb_export_kwargs: Any
) -> DGLHeteroGraph:
raise NotImplementedError # pragma: no cover

def arangodb_collections_to_dgl(
self, name: str, v_cols: Set[str], e_cols: Set[str], **query_options: Any
self, name: str, v_cols: Set[str], e_cols: Set[str], **adb_export_kwargs: Any
) -> DGLHeteroGraph:
raise NotImplementedError # pragma: no cover

def arangodb_graph_to_dgl(self, name: str, **query_options: Any) -> DGLHeteroGraph:
def arangodb_graph_to_dgl(
self, name: str, **adb_export_kwargs: Any
) -> DGLHeteroGraph:
raise NotImplementedError # pragma: no cover

def dgl_to_arangodb(
Expand All @@ -34,7 +36,7 @@ def dgl_to_arangodb(
metagraph: DGLMetagraph = {},
explicit_metagraph: bool = True,
overwrite_graph: bool = False,
**import_options: Any,
**adb_import_kwargs: Any,
) -> ArangoDBGraph:
raise NotImplementedError # pragma: no cover

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