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Add $launchDir and change directory where Nextflow processes are executed #117

Merged
merged 22 commits into from
Sep 3, 2023
Merged

Add $launchDir and change directory where Nextflow processes are executed #117

merged 22 commits into from
Sep 3, 2023

Commits on Aug 30, 2023

  1. Execute Nextflow process in $launchDir and add additional variables

    @lukfor
    lukfor committed Aug 30, 2023
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  2. Refactore directory creation and fix remaining tests

    @lukfor
    lukfor committed Aug 30, 2023
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  3. Add missing default HOME directory

    @lukfor
    lukfor committed Aug 30, 2023
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  4. Fix problem with github repositories in script tag

    @lukfor
    lukfor committed Aug 30, 2023
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  5. Merge branch 'main' into fixes/relative-output-dir

    @lukfor
    lukfor authored Aug 30, 2023
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Commits on Aug 31, 2023

  1. Cleanup test context

    @lukfor
    lukfor committed Aug 31, 2023
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  2. Add testcase for $launchDir

    @lukfor
    lukfor committed Aug 31, 2023
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  3. Add more refactoring

    @lukfor
    lukfor committed Aug 31, 2023
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  4. Add variables $moduleDir and `$moduleTestDir

    @lukfor
    lukfor committed Aug 31, 2023
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  5. Cleanup params map and fix issues with closures and delegates

    @lukfor
    lukfor committed Aug 31, 2023
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  6. Fix issue with empty script and moduleDir

    @lukfor
    lukfor committed Aug 31, 2023
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  7. Remove name property from TestContext to avoid collision

    @lukfor
    lukfor committed Aug 31, 2023
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  8. Add basic documentation

    @lukfor
    lukfor committed Aug 31, 2023
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  9. Remove auto-sort limitation from docs

    @lukfor
    lukfor committed Aug 31, 2023
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Commits on Sep 2, 2023

  1. Merge branch 'main' into fixes/relative-output-dir

    @lukfor
    lukfor authored Sep 2, 2023
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  2. Fix merge issues

    @lukfor
    lukfor committed Sep 2, 2023
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  3. Fix missing workflow name

    @lukfor
    lukfor committed Sep 2, 2023
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  4. Fix issue with wrong hash in setup method and cleanup dsl1

    @lukfor
    lukfor committed Sep 2, 2023
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  5. Fix wrong snapshot

    @lukfor
    lukfor committed Sep 2, 2023
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  6. Merge branch 'main' into fixes/relative-output-dir

    @lukfor
    lukfor authored Sep 2, 2023
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  7. Remove print statements from workflow mock

    @lukfor
    lukfor authored Sep 2, 2023
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  8. Remove println from workflow mock

    @lukfor
    lukfor authored Sep 2, 2023
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