updated to 1.0.2

bcthomas · Sep 1, 2015 · 3dfd279 · 3dfd279
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commit 3dfd279
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diff --git a/AUTHORS b/AUTHORS
@@ -1,2 +1,2 @@
 pullseq/seqdiff was written by Brian C. Thomas ([email protected])
-Copyright 2013
+Copyright 2015
diff --git a/ChangeLog b/ChangeLog
@@ -1,6 +1,78 @@
+2015-08-17 12:40:39 -0700 Brian C. Thomas 
+
+	* Merge branch 'master' of github.com:bcthomas/pullseq (HEAD -> master, origin/master)
+
+2015-08-17 12:36:36 -0700 Brian C. Thomas 
+
+	* fixed fasta comment bug
+
+2015-01-08 08:29:58 -0800 Brian C. Thomas 
+
+	* closed names_fp file pointer
+
+2014-09-17 12:04:28 -0700 Brian C. Thomas 
+
+	* update uthash to 1.9.9.1
+
+2014-08-15 16:57:44 -0700 Brian C. Thomas 
+
+	* update to 1.0.1
+
+2014-08-15 16:56:54 -0700 Brian C. Thomas 
+
+	* fixed bug in search_header()
+
+2014-08-13 10:15:05 -0700 Brian C. Thomas 
+
+	* updated README
+
+2014-08-13 09:17:09 -0700 Brian C. Thomas 
+
+	* changed param name to "regex" and short to "-g"
+
+2014-08-13 09:01:04 -0700 Brian C. Thomas 
+
+	* updated regex matching to be case-insensitive
+
+2014-08-11 12:05:27 -0700 Brian C. Thomas 
+
+	* Regex searching and some refactoring
+
+2014-07-16 09:18:12 -0700 Brian C. Thomas 
+
+	* allow '>' or '@' in the names files
+
+2013-12-16 08:42:23 -0800 Brian C. Thomas 
+
+	* added ability to get names from STDIN
+
+2013-12-13 07:21:01 -0800 Brian C. Thomas 
+
+	* fixed but in FASTQ header output
+
+2013-10-25 11:59:14 -0700 Brian C. Thomas 
+
+	* typo
+
+2013-10-25 11:57:50 -0700 Brian C. Thomas 
+
+	* updated README
+
+2013-10-25 11:55:08 -0700 Brian C. Thomas 
+
+	* added sequence counting, version, help
+
+2013-03-13 13:39:00 -0700 Brian C. Thomas 
+
+	* Merge branch 'seqdiff'
+
+2013-03-13 13:37:59 -0700 Brian C. Thomas 
+
+	* updated docs
+
 2013-03-13 13:26:11 -0700 Brian C. Thomas 
 
-	* finished seqdiff (HEAD, seqdiff)
+	* finished seqdiff
 
 2013-03-09 14:25:41 -0800 Brian C. Thomas 
 
@@ -10,6 +82,10 @@
 
 	* updated license to be accurate
 
+2013-02-28 09:44:44 -0800 Brian C. Thomas 
+
+	* updated license to be accurate
+
 2013-02-27 15:10:50 -0800 Brian C. Thomas 
 
 	* updated AC_CONFIG_SRCDIR

diff --git a/README b/README
@@ -93,9 +93,10 @@ INSTALL:
   make         # will build the application
   make install # will install in /usr/local by default
 
-  From a Tar file:
+  From a Release file (tar or zip):
   tar xvf pullseq_version.tar.gz
   cd pullseq_version
+  ./autoconf   # make sure configuration is set
   ./configure  # configure the application based on your system
   make         # will build the application
   make install # will install in /usr/local by default
diff --git a/src/global.h b/src/global.h
@@ -1,7 +1,7 @@
 #ifndef GLOBAL_H
 #define GLOBAL_H
 
-#define PULLSEQ_VERSION "1.0.1"
+#define PULLSEQ_VERSION "1.0.2"
 
 #define _POSIX_C_SOURCE 200809L
 /*

diff --git a/src/pullseq.c b/src/pullseq.c
@@ -18,7 +18,7 @@ extern int verbose_flag;
 void show_usage(int status) {
 	fprintf(stderr, "pullseq - a bioinformatics tool for manipulating fasta and fastq files\n");
 	fprintf(stderr, "\nVersion: %s              Name lookup method: %s", PULLSEQ_VERSION, PULLSEQ_SORTMETHOD);
-	fprintf(stderr, "\n(Written by bct - 2014; copyright 2012-2014)\n");
+	fprintf(stderr, "\n(Written by bct - copyright 2012-2015)\n");
 	fprintf(stderr, "\nUsage:\n");
 	fprintf(stderr, " %s -i <input fasta/fastq file> -n <header names to select>\n\n", progname);
 	fprintf(stderr, " %s -i <input fasta/fastq file> -m <minimum sequence length>\n\n", progname);