Merge pull request #462 from bear-rsg/ngenomesyn141

Ngenomesyn141

easyconfigs/n/NGenomeSyn/NGenomeSyn-1.41-GCC-12.3.0.eb

@@ -0,0 +1,44 @@
+# This easyconfig was created by the BEAR Software team at the University of Birmingham.
+easyblock = 'Binary'
+
+name = 'NGenomeSyn'
+version = '1.41'
+versionsuffix = '-Perl-5.36.1'
+
+homepage = "https://github.com/hewm2008/NGenomeSyn?tab=readme-ov-file"
+description = """NGenomeSyn, an easy-to-use and flexible tool, for publication-quality visualization of syntenic
+ relationships (user-defined or generated by our custom script) and genomic features (e.g. repeats, structural
+ variations, genes) on tens of genomes with high customization. NGenomeSyn allows its user to adjust default options for
+ genome and link styles defined in the configuration file and simply adjusts options of moving, scaling, and rotation of
+ target genomes, yielding a rich layout and publication-ready figure. A state-to-the-art figure enables users and
+ readers to quickly catch key points hidden in the large-amount data at a galance. Moreover, NGenomeSyn could be
+ applied on the visualization of relationships among other data with a similar input format(similar to sankey diagram).
+"""
+
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
+
+github_account = 'hewm2008'
+source_urls = [GITHUB_SOURCE]
+sources = ['v%(version)s.tar.gz']
+checksums = ['0a3702fc21ccc90ed7d7c7fcc4290c05e0efdbb26719af0646849826d59ca968']
+
+dependencies = [('SVG', '2.87'), ('ImageMagick', '7.1.1-15')]
+
+extract_sources = True
+start_dir = '%(name)s-%(version)s'
+# install_cmd = 'tar -C %(installdir)s -xf v%(version)s.tar.gz --strip 1'
+
+postinstallcmds = [
+    'sed -i "0,/perl/s/perl/env -S perl/" %(installdir)s/bin/NGenomeSyn',
+    'LINE=$(grep -nA1 usage2 bin/NGenomeSyn|tail -n1|cut -d- -f1);sed -i "${LINE}s/1/0/" %(installdir)s/bin/NGenomeSyn',
+    'chmod -R 755 %(installdir)s/bin/*'
+]
+
+sanity_check_paths = {
+    'files': ['bin/%(name)s'],
+    'dirs': ['bin'],
+}
+
+sanity_check_commands = [(name, '-help')]
+
+moduleclass = 'bio'

easyconfigs/s/SVG/SVG-2.87-GCC-12.3.0.eb

@@ -0,0 +1,26 @@
+easyblock = 'PerlModule'
+
+name = 'SVG'
+version = '2.87'
+
+homepage = 'https://metacpan.org/pod/SVG'
+description = "Perl binding for SVG"
+
+toolchain = {'name': 'GCC', 'version': '12.3.0'}
+
+source_urls = ['https://cpan.metacpan.org/authors/id/M/MA/MANWAR/']
+sources = [SOURCE_TAR_GZ]
+checksums = ['b3fa58c1c59942b4ebef003da97c3e01e531480ca29e8efbe327ff0589c0bd3c']
+
+dependencies = [
+    ('Perl', '5.36.1'),
+]
+
+options = {'modulename': 'SVG'}
+
+sanity_check_paths = {
+    'files': ['lib/perl5/site_perl/%(perlver)s/SVG.pm'],
+    'dirs': ['lib/perl5/site_perl/%(perlver)s/SVG'],
+}
+
+moduleclass = 'data'