Merge pull request #90 from bento-platform/chore/update

chore: update base image, dependencies; bump to 0.14.3

.github/workflows/build.yml

@@ -22,7 +22,7 @@ jobs:
         uses: actions/checkout@v4
 
       - name: Run Bento build action
-        uses: bento-platform/bento_build_action@v0.11.1
+        uses: bento-platform/bento_build_action@v1.0.0
         with:
           registry: ghcr.io
           registry-username: ${{ github.actor }}

Dockerfile

@@ -47,7 +47,7 @@ RUN curl -L https://github.com/Ensembl/ensembl-xs/archive/2.3.2.zip -o ensembl-x
 
 WORKDIR /
 
-FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.07.09 AS base-deps
+FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.08.12 AS base-deps
 
 SHELL ["/bin/bash", "-c"]
 

container.requirements.txt

@@ -1,4 +1,4 @@
-gunicorn==22.0.0
-gevent==23.9.1
-pysam>=0.22.0,<0.23.0
-fasta-checksum-utils>=0.4.1,<0.5
+gunicorn==23.0.0
+gevent==24.2.1
+pysam>=0.22.1,<0.23.0
+fasta-checksum-utils>=0.4.3,<0.5

dev.Dockerfile

@@ -47,7 +47,7 @@ RUN curl -L https://github.com/Ensembl/ensembl-xs/archive/2.3.2.zip -o ensembl-x
 
 WORKDIR /
 
-FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.07.09 AS base-deps
+FROM ghcr.io/bento-platform/bento_base_image:python-debian-2024.08.12 AS base-deps
 
 LABEL org.opencontainers.image.description="Local development image for Bento WES."
 LABEL devcontainer.metadata='[{ \