Merge pull request #61 from bento-platform/chore/service-runner-impro…

…vements

chore: gunicorn logging + gevent worker + increased timeout

container.requirements.txt

@@ -1,3 +1,4 @@
 gunicorn==21.2.0
+gevent==23.9.1
 pysam>=0.22.0,<0.23.0
 fasta-checksum-utils>=0.3.1,<0.4

pyproject.toml

@@ -30,7 +30,7 @@ requests = "^2.28.1"
 Flask = "~2.2.5"
 pydantic = "^2.0.2"
 flask-cors = "^4.0.0"
-werkzeug = "~2.2.2"  # debugpy is broken with werkzeug 2.3.x so pin this manually
+werkzeug = "~2.2.3"  # debugpy is broken with werkzeug 2.3.x so pin this manually
 
 [tool.poetry.group.dev.dependencies]
 coverage = "^7.2.2"

run.bash

@@ -6,12 +6,14 @@
 # Start Celery worker with log level dependent on BENTO_DEBUG
 echo "[bento_wes] [entrypoint] Starting celery worker"
 celery_log_level="INFO"
+gunicorn_log_level="info"
 if [[
   "${BENTO_DEBUG}" == "true" ||
   "${BENTO_DEBUG}" == "True" ||
   "${BENTO_DEBUG}" == "1"
 ]]; then
   celery_log_level="DEBUG"
+  gunicorn_log_level="debug"
 fi
 celery --app bento_wes.app worker --loglevel="${celery_log_level}" &
 
@@ -20,6 +22,9 @@ echo "[bento_wes] [entrypoint] Starting gunicorn"
 # using 1 worker, multiple threads
 # see https://stackoverflow.com/questions/38425620/gunicorn-workers-and-threads
 gunicorn bento_wes.app:application \
+  --log-level "${gunicorn_log_level}" \
+  --timeout 660 \
   --workers 1 \
+  --worker-class 'gevent' \
   --threads "$(( 2 * $(nproc --all) + 1))" \
   --bind "0.0.0.0:${INTERNAL_PORT}"