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fix: missing WOMtool in prod docker img
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davidlougheed committed Mar 25, 2024
1 parent 1b7704a commit ea80649
Showing 1 changed file with 3 additions and 2 deletions.
5 changes: 3 additions & 2 deletions Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@ RUN apt-get update -y && \
cp -r vcf2maf/data /opt/data && \
rm -rf vcf2maf

# Install Cromwell + WOMtool
# Download Cromwell + WOMtool
ENV CROMWELL_VERSION=86
WORKDIR /
RUN curl -L \
Expand Down Expand Up @@ -122,8 +122,9 @@ RUN poetry install --without dev
# - Copy VCF2MAF
COPY --from=downloaded-deps /opt /opt

# - Copy Cromwell
# - Copy Cromwell + WOMtool
COPY --from=downloaded-deps /cromwell.jar /cromwell.jar
COPY --from=downloaded-deps /womtool.jar /womtoo.jar

# - Copy Ensembl-VEP
COPY --from=ensemblorg/ensembl-vep:release_111.0 /usr/share/perl/5.34.0/CPAN /opt/vep
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