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feat: add Ensembl-VEP and VCF2MAF for cBio workflows #31

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merged 14 commits into from
Mar 1, 2024

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codecov bot commented Jan 25, 2023

Codecov Report

All modified and coverable lines are covered by tests ✅

❗ No coverage uploaded for pull request base (master@4fd02cf). Click here to learn what that means.

❗ Current head 07cc37d differs from pull request most recent head 37fa32f. Consider uploading reports for the commit 37fa32f to get more accurate results

Additional details and impacted files
@@            Coverage Diff            @@
##             master      #31   +/-   ##
=========================================
  Coverage          ?   55.87%           
=========================================
  Files             ?       17           
  Lines             ?      834           
  Branches          ?       98           
=========================================
  Hits              ?      466           
  Misses            ?      340           
  Partials          ?       28           

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@davidlougheed davidlougheed changed the title [WIP] cBioPortal support in Dockerfiles [WIP] Add Ensembl-VEP and VCF2MAF to container for cBioPortal workflows Feb 27, 2024
@davidlougheed davidlougheed changed the title [WIP] Add Ensembl-VEP and VCF2MAF to container for cBioPortal workflows [WIP] Add Ensembl-VEP and VCF2MAF to container for cBio workflows Feb 27, 2024
@davidlougheed davidlougheed changed the title [WIP] Add Ensembl-VEP and VCF2MAF to container for cBio workflows feat: add Ensembl-VEP and VCF2MAF for cBio workflows Feb 27, 2024
@davidlougheed davidlougheed marked this pull request as ready for review March 1, 2024 16:57
@davidlougheed davidlougheed merged commit c0a5481 into master Mar 1, 2024
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@davidlougheed davidlougheed deleted the cbioportal branch March 1, 2024 16:57
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