Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

refact!: remove Bento 'tables', alter ingestion procedure, add authz #41

Merged
merged 101 commits into from
Aug 22, 2023
Merged

refact!: remove Bento 'tables', alter ingestion procedure, add authz #41

merged 101 commits into from
Aug 22, 2023

Conversation

davidlougheed
Copy link
Member

@davidlougheed davidlougheed commented Jul 6, 2023 •
edited
Loading

chore!: drop support for python < 3.10
chore!: drop toil references

@davidlougheed
chore: update lockfile
42920aa
@davidlougheed
chore!: drop support for python<3.10 and update bento_lib
402b0de
@davidlougheed
chore: rm idea files
bc75ada
@davidlougheed
chore: use bento_debug instead of is_running_dev
cd00745
@davidlougheed
chore: set up authz middleware
1b74c37
@davidlougheed
refact: fix token factory name
7804c61
@davidlougheed
chore: pass an access token into workflow
c0af960
@davidlougheed
refact!: table_id -> dataset_id
3bf0d9d
@davidlougheed
chore!: require project id in addition to dataset id
fbf69c0
@davidlougheed
chore: rm toil
e60d72d
@davidlougheed
docs: rm mentions of toil & replace with cromwell
58d9f6b
@davidlougheed
chore!: start pulling out stuff related to ingestion url / one-time-t…
362f76c 
…okens / auto-drs
@davidlougheed
chore!: remove old permissions code
eff99cd
@davidlougheed
chore: remove dead code
25fcd71
@davidlougheed
fix: improve type hint for get_run_details
6b2b80e
@davidlougheed
feat: impl permissions checks on routes
d10e50e
@davidlougheed
ci: update python versions for test workflow
c7b78c4
@davidlougheed
fix: impl _check_runs_permission
e0c4d01
@davidlougheed
fix: project-level runs hypothetical valid case
5212559
@davidlougheed
fix: use consistent logger for route handlers
bb772b1
@davidlougheed
lint & hint
6733751
@davidlougheed
chore!: remove legacy git info in dev mode from service-info
15a9526
@davidlougheed
refact!: always run what used to be chord_callback + remove chord_mod…
477fa37 
…e concept
@davidlougheed
refact: move out try/catch from create_run
9ae9eca
@davidlougheed
chore!: remove ingestion/ingest-url code
7a2fe06
@davidlougheed
chore: todo updates
7cc37eb
@davidlougheed
fix: mark authz as done when error-handling create run call
f6b9334
@davidlougheed
chore: update prod cromwell to 85
b5bea82
@davidlougheed
chore: update docker image base versions
6623dab
@davidlougheed
refact!: rename CHORD_URL to BENTO_URL
4dc1445
davidlougheed and others added 13 commits July 20, 2023 11:43
@v-rocheleau v-rocheleau marked this pull request as ready for review August 9, 2023 15:25
v-rocheleau and others added 14 commits August 15, 2023 16:36
@davidlougheed davidlougheed merged commit 4ede462 into master Aug 22, 2023
6 checks passed
@davidlougheed davidlougheed deleted the chore/rm-tables-add-authz branch August 31, 2023 19:56
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
2 participants
@davidlougheed @v-rocheleau