Should fix 2.7 failing build

betteridiot · Nov 29, 2018 · 50f1877 · 50f1877
1 parent f6e5025
commit 50f1877
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Showing 22 changed files with 37 additions and 37 deletions.
diff --git a/bamnostic/utils.py b/bamnostic/utils.py
@@ -388,7 +388,7 @@ def unpack(fmt, _io):
     try:
         # if it is byte object
         out = struct.unpack(fmt, _io)
-    except TypeError:
+    except:
         # if it is a file object
         out = struct.unpack(fmt, _io.read(size))
     if len(out) > 1:

diff --git a/codemeta.json b/codemeta.json
@@ -37,8 +37,8 @@
   "description": "BAMnostic is a Pure Python OS, version, and runtime agnostic BAM file parser",
   "keywords": "BAM, pysam, genomics, genetics, htslib, samtools",
   "license": "https://github.com/betteridiot/bamnostic/blob/master/LICENSE",
-  "softwareVersion": "v1.0.6,
-  "version": "v1.0.6",
+  "softwareVersion": "v1.0.7,
+  "version": "v1.0.7",
   "readme": "https://github.com/betteridiot/bamnostic/blob/master/README.md",
   "buildInstructions": "https://github.com/betteridiot/bamnostic/blob/master/README.md",
   "issueTracker": "https://github.com/betteridiot/bamnostic/issues",

diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
diff --git a/docs/build/html/.buildinfo b/docs/build/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: bcdbf5372f05aa74274336aa5687ab30
+config: 6d491e59de0287a809983c89c4c65de7
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/build/html/_modules/bamnostic/bai.html b/docs/build/html/_modules/bamnostic/bai.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>bamnostic.bai &mdash; bamnostic 1.0.6 documentation</title>
+  <title>bamnostic.bai &mdash; bamnostic 1.0.7 documentation</title>
 
 
 
@@ -56,7 +56,7 @@
 
 
               <div class="version">
-                1.0.6
+                1.0.7
               </div>
 
 

diff --git a/docs/build/html/_modules/bamnostic/bgzf.html b/docs/build/html/_modules/bamnostic/bgzf.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>bamnostic.bgzf &mdash; bamnostic 1.0.6 documentation</title>
+  <title>bamnostic.bgzf &mdash; bamnostic 1.0.7 documentation</title>
 
 
 
@@ -56,7 +56,7 @@
 
 
               <div class="version">
-                1.0.6
+                1.0.7
               </div>
 
 

diff --git a/docs/build/html/_modules/bamnostic/core.html b/docs/build/html/_modules/bamnostic/core.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>bamnostic.core &mdash; bamnostic 1.0.6 documentation</title>
+  <title>bamnostic.core &mdash; bamnostic 1.0.7 documentation</title>
 
 
 
@@ -56,7 +56,7 @@
 
 
               <div class="version">
-                1.0.6
+                1.0.7
               </div>
 
 

diff --git a/docs/build/html/_modules/bamnostic/utils.html b/docs/build/html/_modules/bamnostic/utils.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>bamnostic.utils &mdash; bamnostic 1.0.6 documentation</title>
+  <title>bamnostic.utils &mdash; bamnostic 1.0.7 documentation</title>
 
 
 
@@ -56,7 +56,7 @@
 
 
               <div class="version">
-                1.0.6
+                1.0.7
               </div>
 
 
@@ -539,7 +539,7 @@ <h1>Source code for bamnostic.utils</h1><div class="highlight"><pre>
     <span class="k">try</span><span class="p">:</span>
         <span class="c1"># if it is byte object</span>
         <span class="n">out</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="n">fmt</span><span class="p">,</span> <span class="n">_io</span><span class="p">)</span>
-    <span class="k">except</span> <span class="ne">TypeError</span><span class="p">:</span>
+    <span class="k">except</span><span class="p">:</span>
         <span class="c1"># if it is a file object</span>
         <span class="n">out</span> <span class="o">=</span> <span class="n">struct</span><span class="o">.</span><span class="n">unpack</span><span class="p">(</span><span class="n">fmt</span><span class="p">,</span> <span class="n">_io</span><span class="o">.</span><span class="n">read</span><span class="p">(</span><span class="n">size</span><span class="p">))</span>
     <span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">out</span><span class="p">)</span> <span class="o">&gt;</span> <span class="mi">1</span><span class="p">:</span>

diff --git a/docs/build/html/_modules/index.html b/docs/build/html/_modules/index.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Overview: module code &mdash; bamnostic 1.0.6 documentation</title>
+  <title>Overview: module code &mdash; bamnostic 1.0.7 documentation</title>
 
 
 
@@ -56,7 +56,7 @@
 
 
               <div class="version">
-                1.0.6
+                1.0.7
               </div>
 
 

diff --git a/docs/build/html/_static/documentation_options.js b/docs/build/html/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '1.0.6',
+    VERSION: '1.0.7',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     FILE_SUFFIX: '.html',

diff --git a/docs/build/html/bamnostic.html b/docs/build/html/bamnostic.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>bamnostic package &mdash; bamnostic 1.0.6 documentation</title>
+  <title>bamnostic package &mdash; bamnostic 1.0.7 documentation</title>
 
 
 
@@ -58,7 +58,7 @@
 
 
               <div class="version">
-                1.0.6
+                1.0.7
               </div>
 
 

diff --git a/docs/build/html/genindex.html b/docs/build/html/genindex.html
@@ -9,7 +9,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Index &mdash; bamnostic 1.0.6 documentation</title>
+  <title>Index &mdash; bamnostic 1.0.7 documentation</title>
 
 
 
@@ -57,7 +57,7 @@
 
 
               <div class="version">
-                1.0.6
+                1.0.7
               </div>
 
 

diff --git a/docs/build/html/index.html b/docs/build/html/index.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Welcome to bamnostic’s documentation! &mdash; bamnostic 1.0.6 documentation</title>
+  <title>Welcome to bamnostic’s documentation! &mdash; bamnostic 1.0.7 documentation</title>
 
 
 
@@ -57,7 +57,7 @@
 
 
               <div class="version">
-                1.0.6
+                1.0.7
               </div>
 
 

diff --git a/docs/build/html/install.html b/docs/build/html/install.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Installation &mdash; bamnostic 1.0.6 documentation</title>
+  <title>Installation &mdash; bamnostic 1.0.7 documentation</title>
 
 
 
@@ -58,7 +58,7 @@
 
 
               <div class="version">
-                1.0.6
+                1.0.7
               </div>
 
 

diff --git a/docs/build/html/objects.inv b/docs/build/html/objects.inv
diff --git a/docs/build/html/py-modindex.html b/docs/build/html/py-modindex.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Python Module Index &mdash; bamnostic 1.0.6 documentation</title>
+  <title>Python Module Index &mdash; bamnostic 1.0.7 documentation</title>
 
 
 
@@ -59,7 +59,7 @@
 
 
               <div class="version">
-                1.0.6
+                1.0.7
               </div>
 
 

diff --git a/docs/build/html/quickstart.html b/docs/build/html/quickstart.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Quickstart &mdash; bamnostic 1.0.6 documentation</title>
+  <title>Quickstart &mdash; bamnostic 1.0.7 documentation</title>
 
 
 
@@ -58,7 +58,7 @@
 
 
               <div class="version">
-                1.0.6
+                1.0.7
               </div>
 
 

diff --git a/docs/build/html/search.html b/docs/build/html/search.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Search &mdash; bamnostic 1.0.6 documentation</title>
+  <title>Search &mdash; bamnostic 1.0.7 documentation</title>
 
 
 
@@ -56,7 +56,7 @@
 
 
               <div class="version">
-                1.0.6
+                1.0.7
               </div>
 
 

diff --git a/docs/build/html/support.html b/docs/build/html/support.html
@@ -8,7 +8,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Citation and Support &mdash; bamnostic 1.0.6 documentation</title>
+  <title>Citation and Support &mdash; bamnostic 1.0.7 documentation</title>
 
 
 
@@ -57,7 +57,7 @@
 
 
               <div class="version">
-                1.0.6
+                1.0.7
               </div>
 
 

diff --git a/docs/paper/codemeta.json b/docs/paper/codemeta.json
@@ -37,8 +37,8 @@
   "description": "BAMnostic: an OS-agnostic toolkit for genomic sequence analysis",
   "keywords": "BAM, pysam, genomics, genetics, htslib, samtools",
   "license": "https://github.com/betteridiot/bamnostic/blob/master/LICENSE",
-  "softwareVersion": "v1.0.6",
-  "version": "v1.0.6",
+  "softwareVersion": "v1.0.7",
+  "version": "v1.0.7",
   "readme": "https://github.com/betteridiot/bamnostic/blob/master/README.md",
   "buildInstructions": "https://github.com/betteridiot/bamnostic/blob/master/README.md",
   "issueTracker": "https://github.com/betteridiot/bamnostic/issues",

diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -24,9 +24,9 @@
 author = 'Marcus D. Sherman'
 
 # The short X.Y version
-version = '1.0.6'
+version = '1.0.7'
 # The full version, including alpha/beta/rc tags
-release = '1.0.6'
+release = '1.0.7'
 
 
 # -- General configuration ---------------------------------------------------

diff --git a/setup.py b/setup.py
@@ -29,7 +29,7 @@ def readme():
 
 setup(
     name='bamnostic',
-    version='1.0.6',
+    version='1.0.7',
     description='Pure Python, OS-agnostic Binary Alignment Map (BAM) random access and parsing tool',
     long_description=readme(),
     url='https://github.com/betteridiot/bamnostic/',