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update entity table
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agahkarakuzu committed Dec 3, 2020
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29 changes: 18 additions & 11 deletions src/99-appendices/04-entity-table.md
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Expand Up @@ -18,17 +18,24 @@ while entity definitions are in [Appendix IX](09-entities.md).

## Magnetic Resonance Imaging

| Entity | Subject | Session | Task | Acquisition | Contrast Enhancing Agent | Reconstruction | Phase-Encoding Direction | Run | Corresponding Modality | Echo | Recording | Part |
|------------------------------------------------------------------------------------------------|-------------------------------------|-------------------------------------|---------------------------------------|-------------------------------------|-----------------------------------|-------------------------------------|-------------------------------------|-------------------------------------|-------------------------------------|---------------------------------------|-------------------------------------------------|---------------------------------------|
| Format | [`sub-<label>`](09-entities.md#sub) | [`ses-<label>`](09-entities.md#ses) | [`task-<label>`](09-entities.md#task) | [`acq-<label>`](09-entities.md#acq) | [`ce-<label>`](09-entities.md#ce) | [`rec-<label>`](09-entities.md#rec) | [`dir-<label>`](09-entities.md#dir) | [`run-<index>`](09-entities.md#run) | [`mod-<label>`](09-entities.md#mod) | [`echo-<index>`](09-entities.md#echo) | [`recording-<label>`](09-entities.md#recording) | [`part-<label>`](09-entities.md#part) |
| anat<br>(T1w T2w T1rho T1map T2map T2star FLAIR FLASH PD PDmap PDT2 inplaneT1 inplaneT2 angio) | REQUIRED | OPTIONAL | | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | | | | OPTIONAL |
| anat<br>(defacemask) | REQUIRED | OPTIONAL | | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | OPTIONAL | | | |
| dwi<br>(dwi sbref) | REQUIRED | OPTIONAL | | OPTIONAL | | | OPTIONAL | OPTIONAL | | | | OPTIONAL |
| fmap<br>(phasediff phase1 phase2 magnitude1 magnitude2 magnitude fieldmap) | REQUIRED | OPTIONAL | | OPTIONAL | | | | OPTIONAL | | | | |
| fmap<br>(epi) | REQUIRED | OPTIONAL | | OPTIONAL | OPTIONAL | | REQUIRED | OPTIONAL | | | | |
| func<br>(bold cbv sbref) | REQUIRED | OPTIONAL | REQUIRED | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | | OPTIONAL |
| func<br>(phase events) | REQUIRED | OPTIONAL | REQUIRED | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | | |
| func<br>(physio stim) | REQUIRED | OPTIONAL | REQUIRED | OPTIONAL | | OPTIONAL | | OPTIONAL | | | OPTIONAL | |
| Entity | Subject | Session | Task | Acquisition | Contrast Enhancing Agent | Reconstruction | Phase-Encoding Direction | Run | Corresponding Modality | Echo | Flip Angle | Inversion Time | Magnetization Transfer | Recording | Part |
|---------------------------------------------------------------------------------------------------------------------------------------------|-------------------------------------|-------------------------------------|---------------------------------------|-------------------------------------|-----------------------------------|-------------------------------------|-------------------------------------|-------------------------------------|-------------------------------------|---------------------------------------|---------------------------------------|-------------------------------------|-----------------------------------|-------------------------------------------------|---------------------------------------|
| Format | [`sub-<label>`](09-entities.md#sub) | [`ses-<label>`](09-entities.md#ses) | [`task-<label>`](09-entities.md#task) | [`acq-<label>`](09-entities.md#acq) | [`ce-<label>`](09-entities.md#ce) | [`rec-<label>`](09-entities.md#rec) | [`dir-<label>`](09-entities.md#dir) | [`run-<index>`](09-entities.md#run) | [`mod-<label>`](09-entities.md#mod) | [`echo-<index>`](09-entities.md#echo) | [`flip-<index>`](09-entities.md#flip) | [`inv-<index>`](09-entities.md#inv) | [`mt-<label>`](09-entities.md#mt) | [`recording-<label>`](09-entities.md#recording) | [`part-<label>`](09-entities.md#part) |
| anat<br>(T1w T2w PDw T2starw FLAIR inplaneT1 inplaneT2 PDT2 angio) | REQUIRED | OPTIONAL | | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | | | | | | | OPTIONAL |
| anat<br>(T1map T2map T2starmap R1map R2map R2starmap PDmap MTRmap MTsat UNIT1 T1rho MWFmap MTVmap PDT2map Chimap TB1map RB1map S0map M0map) | REQUIRED | OPTIONAL | | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | | | | | | | |
| anat<br>(defacemask) | REQUIRED | OPTIONAL | | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | OPTIONAL | | | | | | |
| anat<br>(MESE MEGRE) | REQUIRED | OPTIONAL | | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | | REQUIRED | | | | | OPTIONAL |
| anat<br>(VFA) | REQUIRED | OPTIONAL | | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | | | REQUIRED | | | | OPTIONAL |
| anat<br>(IRT1) | REQUIRED | OPTIONAL | | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | | | | REQUIRED | | | OPTIONAL |
| anat<br>(MP2RAGE) | REQUIRED | OPTIONAL | | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | | OPTIONAL | REQUIRED | REQUIRED | | | OPTIONAL |
| anat<br>(MPM MTS) | REQUIRED | OPTIONAL | | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | | OPTIONAL | REQUIRED | | REQUIRED | | OPTIONAL |
| anat<br>(MTR) | REQUIRED | OPTIONAL | | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | | | | | REQUIRED | | OPTIONAL |
| dwi<br>(dwi sbref) | REQUIRED | OPTIONAL | | OPTIONAL | | | OPTIONAL | OPTIONAL | | | | | | | OPTIONAL |
| fmap<br>(phasediff phase1 phase2 magnitude1 magnitude2 magnitude fieldmap) | REQUIRED | OPTIONAL | | OPTIONAL | | | | OPTIONAL | | | | | | | |
| fmap<br>(epi) | REQUIRED | OPTIONAL | | OPTIONAL | OPTIONAL | | REQUIRED | OPTIONAL | | | | | | | |
| func<br>(bold cbv sbref) | REQUIRED | OPTIONAL | REQUIRED | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | | | | | OPTIONAL |
| func<br>(phase events) | REQUIRED | OPTIONAL | REQUIRED | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | | | | | |
| func<br>(physio stim) | REQUIRED | OPTIONAL | REQUIRED | OPTIONAL | | OPTIONAL | | OPTIONAL | | | | | | OPTIONAL | |

## Encephalography (EEG, iEEG, and MEG)

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