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[MISC] Expand entity table for MEG/EEG/iEEG specific files #198

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merged 5 commits into from
Apr 25, 2019
Merged

[MISC] Expand entity table for MEG/EEG/iEEG specific files #198

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7be62a2
adding Space entity, expanding columns for MEG/EEG/iEEG specific files
sappelhoff Apr 6, 2019
fe6f594
remove task label from electrodes
sappelhoff Apr 23, 2019
5831c49
add markers, remove acq from events
sappelhoff Apr 25, 2019
3992833
remove whitespace
sappelhoff Apr 25, 2019
503a30a
fix table border
sappelhoff Apr 25, 2019
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29 changes: 15 additions & 14 deletions src/99-appendices/04-entity-table.md
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Original file line number Diff line number Diff line change
Expand Up @@ -7,17 +7,18 @@ precede the reconstruction entity. REQUIRED and OPTIONAL entities for a given
file type are denoted. Entity formats indicate whether the value is alphanumeric
(`<label>`) or numeric (`<index>`).

| Entity | Format | anat<br>(T1w T2w T1rho T1map T2map T2star FLAIR FLASH PD PDmap PDT2 inplaneT1 inplaneT2 angio) | anat<br>(defacemask) | func<br>(bold sbref events) | func<br>(physio stim) | dwi<br>(dwi bvec bval) | fmap<br>(phasediff phase1 phase2 magnitude1 magnitude2 magnitude fieldmap) | fmap<br>(epi) | beh<br>(events stim physio) | meg<br>(meg channels markers) | meg<br>(photo coordsystem headshape) |
| :----------------------- | :------------------ | :--------------------------------------------------------------------------------------------- | :------------------- | :-------------------------- | :-------------------- | :--------------------- | :------------------------------------------------------------------------- | :------------ | :-------------------------- | :---------------------------- | :----------------------------------- |
| Subject | `sub-<label>` | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED |
| Session | `ses-<label>` | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL |
| Task | `task-<label>` | | | REQUIRED | REQUIRED | | | | REQUIRED | REQUIRED | REQUIRED |
| Acquisition | `acq-<label>` | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | OPTIONAL |
| Contrast Enhancing Agent | `ce-<label>` | OPTIONAL | OPTIONAL | OPTIONAL | | | | OPTIONAL | | | |
| Reconstruction | `rec-<label>` | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | | | | | | |
| Phase-Encoding Direction | `dir-<label>` | | | OPTIONAL | | OPTIONAL | | REQUIRED | | | |
| Run | `run-<index>` | | | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | OPTIONAL |
| Corresponding modality | `mod-<label>` | | OPTIONAL | | | | | | | | |
| Echo | `echo-<index>` | | | OPTIONAL | | | | | | | |
| Recording | `recording-<label>` | | | | OPTIONAL | | | | | | |
| Processed (on device) | `proc-<label>` | | | | OPTIONAL | | | | | OPTIONAL | OPTIONAL |
| Entity | Format | anat<br>(T1w T2w T1rho T1map T2map T2star FLAIR FLASH PD PDmap PDT2 inplaneT1 inplaneT2 angio) | anat<br>(defacemask) | func<br>(bold sbref events) | func<br>(physio stim) | dwi<br>(dwi bvec bval) | fmap<br>(phasediff phase1 phase2 magnitude1 magnitude2 magnitude fieldmap) | fmap<br>(epi) | beh<br>(events stim physio) | meg<br> | eeg<br> | ieeg<br> | channels<br>(meg/eeg/ieeg) | headshape<br>(meg) | markers<br>(meg) | photo<br>(meg/eeg/ieeg) | electrodes<br>(eeg/ieeg) | events<br>(meg/eeg/ieeg) |
| :----------------------- | :------------------ | :--------------------------------------------------------------------------------------------- | :------------------- | :-------------------------- | :-------------------- | :--------------------- | :------------------------------------------------------------------------- | :------------ | :-------------------------- | :------- | :------- | :------- | :------------------------- | :----------------- | :--------------- | :---------------------- | :----------------------- | :----------------------- |
| Subject | `sub-<label>` | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED |
| Session | `ses-<label>` | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL |
| Task | `task-<label>` | | | REQUIRED | REQUIRED | | | | REQUIRED | REQUIRED | REQUIRED | REQUIRED | REQUIRED | | OPTIONAL | | | REQUIRED |
| Acquisition | `acq-<label>` | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | |
| Contrast Enhancing Agent | `ce-<label>` | OPTIONAL | OPTIONAL | OPTIONAL | | | | OPTIONAL | | | | | | | | | | |
| Reconstruction | `rec-<label>` | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | | | | | | | | | | | | | |
| Phase-Encoding Direction | `dir-<label>` | | | OPTIONAL | | OPTIONAL | | REQUIRED | | | | | | | | | | |
| Run | `run-<index>` | | | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL | OPTIONAL | OPTIONAL | OPTIONAL | | | | | OPTIONAL |
| Corresponding modality | `mod-<label>` | | OPTIONAL | | | | | | | | | | | | | | | |
| Echo | `echo-<index>` | | | OPTIONAL | | | | | | | | | | | | | | |
| Recording | `recording-<label>` | | | | OPTIONAL | | | | | | | | | | | | | |
| Processed (on device) | `proc-<label>` | | | | OPTIONAL | | | | | OPTIONAL | | | | | | | | |
| Space | `space-<label>` | | | | | | | | | | | | | OPTIONAL | OPTIONAL | | OPTIONAL | |