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[FIX] Add OPTIONAL acq entity to channels.tsv, events.tsv to match electrophysiological acquisitions #677

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Nov 30, 2020
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[FIX] Add OPTIONAL acq entity to channels.tsv, events.tsv to match electrophysiological acquisitions #677

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82e19c7
[FIX] make acq entity optional for eeg, meg, ieeg, channels
sappelhoff Nov 19, 2020
4741b5d
add channels acq optional to schema
sappelhoff Nov 19, 2020
37527d5
run bids_schema.py
sappelhoff Nov 19, 2020
60484df
add events acq optional to schema
sappelhoff Nov 20, 2020
181f5cb
run bids_schema.py
sappelhoff Nov 20, 2020
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6 changes: 3 additions & 3 deletions src/04-modality-specific-files/02-magnetoencephalography.md
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Original file line number Diff line number Diff line change
Expand Up @@ -14,8 +14,8 @@ Template:
sub-<label>/
[ses-<label>]/
meg/
sub-<label>[_ses-<label>]_task-<label>[_run-<index>][_proc-<label>]_meg.<manufacturer_specific_extension>
[sub-<label>[_ses-<label>]_task-<label>[_run-<index>][_proc-<label>]_meg.json]
sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>][_proc-<label>]_meg.<manufacturer_specific_extension>
[sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>][_proc-<label>]_meg.json]
```

Unprocessed MEG data MUST be stored in the native file format of the MEG
Expand Down Expand Up @@ -195,7 +195,7 @@ Template:
sub-<label>/
[ses-<label>]/
meg/
[sub-<label>[_ses-<label>]_task-<label>[_run-<index>][_proc-<label>]_channels.tsv]
[sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>][_proc-<label>]_channels.tsv]
```

This file is RECOMMENDED as it provides easily searchable information across
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6 changes: 3 additions & 3 deletions src/04-modality-specific-files/03-electroencephalography.md
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Expand Up @@ -23,8 +23,8 @@ Template:
sub-<label>/
[ses-<label>]/
eeg/
sub-<label>[_ses-<label>]_task-<label>[_run-<index>]_eeg.<manufacturer_specific_extension>
sub-<label>[_ses-<label>]_task-<label>[_run-<index>]_eeg.json
sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>]_eeg.<manufacturer_specific_extension>
sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>]_eeg.json
```

The EEG community uses a variety of formats for storing raw data, and there is
Expand Down Expand Up @@ -197,7 +197,7 @@ Template:
sub-<label>/
[ses-<label>]/
eeg/
[sub-<label>[_ses-<label>]_task-<label>[_run-<index>]_channels.tsv]
[sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>]_channels.tsv]
```

This file is RECOMMENDED as it provides easily searchable information across
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6 changes: 3 additions & 3 deletions src/04-modality-specific-files/04-intracranial-electroencephalography.md
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Original file line number Diff line number Diff line change
Expand Up @@ -14,8 +14,8 @@ Template:
sub-<label>/
[ses-<label>]/
ieeg/
sub-<label>[_ses-<label>]_task-<label>[_run-<index>]_ieeg.<manufacturer_specific_extension>
sub-<label>[_ses-<label>]_task-<label>[_run-<index>]_ieeg.json
sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>]_ieeg.<manufacturer_specific_extension>
sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>]_ieeg.json
```

The iEEG community uses a variety of formats for storing raw data, and there is
Expand Down Expand Up @@ -209,7 +209,7 @@ Template:
sub-<label>/
[ses-<label>]/
ieeg/
[sub-<label>[_ses-<label>]_task-<label>[_run-<index>]_channels.tsv]
[sub-<label>[_ses-<label>]_task-<label>[_acq-<label>][_run-<index>]_channels.tsv]
```

A channel represents one time series recorded with the recording system (for
Expand Down
4 changes: 2 additions & 2 deletions src/99-appendices/04-entity-table.md
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Expand Up @@ -39,9 +39,9 @@ while entity definitions are in [Appendix IX](09-entities.md).
| meg<br>(meg) | REQUIRED | OPTIONAL | REQUIRED | OPTIONAL | OPTIONAL | OPTIONAL | | OPTIONAL |
| meg<br>(headshape) | REQUIRED | OPTIONAL | | OPTIONAL | | | OPTIONAL | |
| meg<br>(markers) | REQUIRED | OPTIONAL | OPTIONAL | OPTIONAL | | | OPTIONAL | |
| channels<br>(meg eeg ieeg) | REQUIRED | OPTIONAL | REQUIRED | | OPTIONAL | | | |
| channels<br>(meg eeg ieeg) | REQUIRED | OPTIONAL | REQUIRED | OPTIONAL | OPTIONAL | | | |
| electrodes<br>(eeg ieeg) | REQUIRED | OPTIONAL | | OPTIONAL | | | OPTIONAL | |
| events<br>(meg eeg ieeg) | REQUIRED | OPTIONAL | REQUIRED | | OPTIONAL | | | |
| events<br>(meg eeg ieeg) | REQUIRED | OPTIONAL | REQUIRED | OPTIONAL | OPTIONAL | | | |
| photo<br>(meg eeg ieeg) | REQUIRED | OPTIONAL | | OPTIONAL | | | | |

## Behavioral Data
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1 change: 1 addition & 0 deletions src/schema/auxdatatypes/channels.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,4 +12,5 @@
sub: required
ses: optional
task: required
acq: optional
run: optional
1 change: 1 addition & 0 deletions src/schema/auxdatatypes/events.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,4 +12,5 @@
sub: required
ses: optional
task: required
acq: optional
run: optional