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update: benchmark
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zprobot committed Jun 11, 2024
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Expand Up @@ -122,6 +122,15 @@ Next, for the peptide table of MaxQuant, we recalculated the Ibaq values using `
<img src='images/PXD007683-LFQ-11samples-ibaq-ibaqpy-and-maxquant.png' style="height:1200px;" />
</div>

If we don't use `cov` to normalize proteins, the result is:

<div style="display:flex;justify-content:center">
<img src='images/PXD007683-LFQ-no_cov.png' style="heigit:600px;" />
</div>
<div style="display:flex;justify-content:center">
<img src='images/PXD007683-LFQ-11samples-no_cov.png' style="height:1200px;" />
</div>

#### LFQ missing values

Number of peptides missing in LFQ experiments.
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