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Merge pull request #62 from zprobot/master
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update: benchmark
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ypriverol authored Jun 2, 2024
2 parents 741de8f + e0043b2 commit 4d639ad
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9 changes: 8 additions & 1 deletion benchmarks/README.md
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Expand Up @@ -176,4 +176,11 @@ We will normalize the MaxLFQ values of the proteins in the DIANN report by divid

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<img src='images/9_tissues-density.png' style="height:400px;" />
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### Performance testing
The [PXD030304](https://ftp.pride.ebi.ac.uk/pub/databases/pride/resources/proteomes/absolute-expression/PXD030304/) project collected mass spectrometry data from 949 cancer cell lines and reanalyzed it using the DIANN analysis pipeline within the quantms platform.The size of the `diann_report.tsv` file is 167GB, after being converted to a parquet file using quantmsio, the size is 15.8GB.We conducted performance testing in a 128GB memory environment.

| Project | Samples | Size(diann report) | Size(parquet file) | Runn time |
|--------|---------|----------|----------|----------|
| PXD030304 | 2013 | 167G | 15.8G | 2.75h |

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