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Merge pull request #70 from bigbio/dev
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ENTRAPMENT -> ENTRAP
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ypriverol authored Jun 15, 2024
2 parents a489b4a + aa51699 commit dfbd164
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Showing 3 changed files with 5 additions and 7 deletions.
8 changes: 4 additions & 4 deletions README.md
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Expand Up @@ -245,7 +245,7 @@ Wang H, Dai C, Pfeuffer J, Sachsenberg T, Sanchez A, Bai M, Perez-Riverol Y. Tis

### Credits

- Julianus Pfeuffer
- Yasset Perez-Riverol
- Hong Wang
- Ping Zheng
- [Julianus Pfeuffer](@jpfeuffer)
- [Yasset Perez-Riverol](@ypriverol)
- [Hong Wang](@WangHong007)
- [Ping Zheng](@zprobot)
2 changes: 1 addition & 1 deletion ibaqpy/ibaq/peptide_normalization.py
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Expand Up @@ -143,7 +143,7 @@ def remove_contaminants_entrapments_decoys(
"""
contaminants = []
contaminants.append("CONTAMINANT")
contaminants.append("ENTRAPMENT")
contaminants.append("ENTRAP")
contaminants.append("DECOY")
cregex = "|".join(contaminants)
return dataset[~dataset[protein_field].str.contains(cregex)]
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2 changes: 0 additions & 2 deletions ibaqpy/ibaqpyc.py
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@@ -1,5 +1,4 @@
import click

from ibaqpy.commands.features2peptides import features2parquet
from ibaqpy.commands.compute_tpa import tpa_compute
from ibaqpy.commands.merge_condition_files import merge_condition_generation
Expand All @@ -9,7 +8,6 @@

CONTEXT_SETTINGS = dict(help_option_names=["-h", "--help"])


@click.group(context_settings=CONTEXT_SETTINGS)
@click.version_option(
version=__init__.__version__,
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