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Correct SDRF of PXD000790 #578

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Oct 18, 2021
Merged

Correct SDRF of PXD000790 #578

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Update PXD000790.sdrf.tsv
KarinSchork Oct 8, 2021
eabaaeb
Merge pull request #1 from KarinSchork/Fix-PXD000790
KarinSchork Oct 8, 2021
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2 changes: 1 addition & 1 deletion annotated-projects/PXD000790/PXD000790.sdrf.tsv
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source name characteristics[organism] characteristics[organism part] characteristics[developmental stage] characteristics[cell type] characteristics[biological replicate] characteristics[disease] characteristics[phenotype] assay name technology type comment[data file] comment[associated file uri] comment[technical replicate] comment[fraction identifier] comment[label] comment[cleavage agent details] comment[instrument] comment[dissociation method] comment[precursor mass tolerance] comment[fragment mass tolerance] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] comment[modification parameters] factor value[phenotype]
Sample1 Mus musculus myoblast not available NT=C2C12;AC=EFO:0001098 1 not available wildtype Run 1 proteomic profiling by mass spectrometry QEII12347.raw ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/05/PXD000790/QEII12347.raw 1 1 AC=MS:1002038;NT=label free sample NT=Trypsin;AC=MS:1001251 NT=LTQ Orbitrap;AC=MS:1000449 NT=collision-induced dissociation;AC=MS:1000133 5 ppm 0.4 Da NT=Oxidation;MT=variable;PP=Anywhere;AC=Unimod:35;TA=M; MM=15 NT=Acetyl;MT=variable;PP=Protein N-Term;AC=Unimod:1;MM=42 NT=Gln->pyro-Glu;MT=variable;PP=Protein N-Term;AC=Unimod:28;MM=-17 NT=Carbamidomethyl;MT=variable;PP=Protein C-Term;AC=Unimod:4;MM=57 NT=Glu->pyro-Glu;MT=variable;PP=Protein N-Term;AC=Unimod:27;MM=-18 NT=Dehydration;MT=variable;PP=Protein C-Term;AC=Unimod:23;MM=-18 wildtype
Sample1 Mus musculus myoblast not available NT=C2C12;AC=EFO:0001098 1 not available wildtype Run 1 proteomic profiling by mass spectrometry OEII12347.raw ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/05/PXD000790/OEII12347.raw 1 1 AC=MS:1002038;NT=label free sample NT=Trypsin;AC=MS:1001251 NT=LTQ Orbitrap;AC=MS:1000449 NT=collision-induced dissociation;AC=MS:1000133 5 ppm 0.4 Da NT=Oxidation;MT=variable;PP=Anywhere;AC=Unimod:35;TA=M; MM=15 NT=Acetyl;MT=variable;PP=Protein N-Term;AC=Unimod:1;MM=42 NT=Gln->pyro-Glu;MT=variable;PP=Protein N-Term;AC=Unimod:28;MM=-17 NT=Carbamidomethyl;MT=variable;PP=Protein C-Term;AC=Unimod:4;MM=57 NT=Glu->pyro-Glu;MT=variable;PP=Protein N-Term;AC=Unimod:27;MM=-18 NT=Dehydration;MT=variable;PP=Protein C-Term;AC=Unimod:23;MM=-18 wildtype